Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39710 1008 / 0 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 340 / 2e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 329 / 9e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 317 / 5e-97 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT3G53700 306 / 7e-93 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 308 / 3e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 300 / 9e-92 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 299 / 2e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 295 / 7e-90 RPF2 rna processing factor 2 (.1) AT5G64320 295 / 7e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012068 [exp] 1521 / 0 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 1456 / 0 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 334 / 1e-103 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 334 / 1e-102 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 320 / 1e-96 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 310 / 6e-94 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 310 / 6e-94 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 312 / 1e-93 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 308 / 2e-93 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105600 [exp] 1080 / 0 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 353 / 9e-111 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 335 / 1e-104 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 333 / 2e-100 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 323 / 1e-99 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098400 [exp] 324 / 3e-99 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G217600 [exp] 323 / 9e-99 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G368700 [exp] 329 / 3e-98 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 318 / 2e-97 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G038400 [exp] 314 / 3e-97 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027914 pacid=23156898 polypeptide=Lus10027914 locus=Lus10027914.g ID=Lus10027914.BGIv1.0 annot-version=v1.0 ATGCCTGTTCCGAACTCTCAGCTTTACCGGAGATTCTCATCCATCTCGTCGCCGGCGGCCGATGCTCTTCTAGCAGAGAGGGCTCTGCTCCTCCTCAAGC GCCACCCTTACCACCTGAATTCAATCTCCTCGGAGTTTACCCCTGAAGCAGCTTATCAATTACTCCTCAAATCCCAGGACGACCAAATCCTAACCCTAAA GTTCATCGACTGGGCACGGCCTCACGGGTTCTTCAACAAAAACCCCCGTTGCAAATGCCTGGCGATTCACATCCTGACAAGGTTCAAGCTTTACAAAACG GCACAGTCCCTCGCACAGGACATGGCCGTCTCCACCGCTGAGGAGGACGATTCAGGCAGGTTTGTGTTTCAGTGTCTGAAGGATACTTACTTTGTCTGCA ATTCGAGCTCTGCCGTGATCGATTTGGTGGTGAAGTCTTACTCTAGTTTGAACTTGATTGATAAGGCTAGGAACATTGTTAATTTAGCTAAAGCTAATGG ATTCATGCCCGGTGTTCTTTCATACAATGCGATTCTGGATTCGATAATCCGGTCCAGGAAGCCGTTTAGCTTGGCTGAAGAGGTTTACAGGGAGATGGTT GCTGGTAAGGTGTCGTTGAATGTCTATAGCTATAATATCTTGATTAGAGGGTTGTGTAGGGGTGGGAATTTGGAAACGGGGGTGAATCTATTTGATGAGA TGGAGAAGAATGGCTGCTTGCCTAATGTTGTTACGTACAATACGGTGATTGATAGTTACTGCAAGTTGAAGAGGATTGACGATGCATTCGGCTTGTTACG ATCGATGGCATTGAAAGGATTGGAACCGAATCTGTTTACTTTCAACATAGTTATTAATGGTTTGTGTCGGGAAGGAAGGATGAAGGAGACAGGAGAGATT CTAGCAGAGATGAAGCAGAAAGGTTATGTGCCTGATGAGGTTACTTACAATACATTGGTGAATGGATACTGCAAGGAGGGTAATTTTCACCAAGCTCTTG TGCTCCACGGGGAGATGTCGAACAATGGTTTGTCCCCTAACGTTGTTACCTTCACGTCTTTGATTAATAGCATGTGTCAGGCCGGGAATCTGAAGCGAGC GATGGAATTTTTCGATCAGATGCATATTAGAGGACTCTCCCCTAACGAGAGGACGTACACTACACTGATAAATGGGTTTTCGCAGCAAGGATATATGAAC GAGGCTCGAGAACTTGTGGACGAAATGAAAGGTAACGGATTTTTGCCATCGATCGTGACATTTAACACCCTAATAAATGGATATTGTGGTTTAGGAAGGA TGGAAGATGCCACGACGGTGTTTGAAGAAATGGAAGGGGTGGGGTTTTCACCAGATGTCGTCAGTTACAGCACTATCATATCTGGATTTTGCCAGAATCG AGAGCTGGACAGGGCGTTTCACGTGAAGAAGGAAATGGTTCAGAAAGGCATTCCATTGGATGCCATAACATATTCAGCATTTATTCAAGGTCTATGTGAA GAAAGGAAATTGATTGAGGCATTTGATCTGTTTCAAGAAATGCTGAATATGAAAGTACCTCCGGATCAAGTTACTTACACAACCTTGATTGATGCCTATT GTAAAGAAGGAGAGTTGAGCAAGGCACTTAACTTGCATGACGAAATGATACAGAAGGGGTTTCTCCCCGATGTCGTTACCTACAGTGTGCTAATCAACGG ACTCAACAAGCAAGCTCGTACTAAGGAAGCGAAGAGGCTATTGCTGAAGCTTTACTCTGATGAATCCATCCCGGCTGATGTCATGTACGACGTCCTTACA GAAAACTGCAGCAGCTTGGAATTCAAGAGCGTGGCGGCTCTGATAAAGGGATTCTGTATAAAGGGTTTGATGGGAGAAGCAGATAGAGTGTTTGAATCGA TGATTGCAAGAAACCACAAGCCTGATGAATCGGTCTTCAACATCATCATACACGGTCATTGCAGATGGGGAAATGTTCAGAAGGCTTATGAACTGTATAC GGAAATGGTTCGATTCGGTTATGTTCCTCACACTGTGACTGTTATTGCTTTGGTTAAGGCGCTTTCCACTGAAGGGATGAACGATCAGTTGAACCTTGTC ATCAGTTACGTGCTGAGAAGCTGCAAGCTTAGTGATGGTGAGCTTTCTAAAGTACTTGTGGAAATCAATAACAATGAAGGGAATATGGACGTGGTTTTCG GTTTGCTTGAATCGATGGCCAAGGATGGCCTTCTTCCGAATAGTGGGGCCTCTGCCAACGACATGGTATGA
AA sequence Show only first row Show all	>Lus10027914 pacid=23156898 polypeptide=Lus10027914 locus=Lus10027914.g ID=Lus10027914.BGIv1.0 annot-version=v1.0 MPVPNSQLYRRFSSISSPAADALLAERALLLLKRHPYHLNSISSEFTPEAAYQLLLKSQDDQILTLKFIDWARPHGFFNKNPRCKCLAIHILTRFKLYKT AQSLAQDMAVSTAEEDDSGRFVFQCLKDTYFVCNSSSAVIDLVVKSYSSLNLIDKARNIVNLAKANGFMPGVLSYNAILDSIIRSRKPFSLAEEVYREMV AGKVSLNVYSYNILIRGLCRGGNLETGVNLFDEMEKNGCLPNVVTYNTVIDSYCKLKRIDDAFGLLRSMALKGLEPNLFTFNIVINGLCREGRMKETGEI LAEMKQKGYVPDEVTYNTLVNGYCKEGNFHQALVLHGEMSNNGLSPNVVTFTSLINSMCQAGNLKRAMEFFDQMHIRGLSPNERTYTTLINGFSQQGYMN EARELVDEMKGNGFLPSIVTFNTLINGYCGLGRMEDATTVFEEMEGVGFSPDVVSYSTIISGFCQNRELDRAFHVKKEMVQKGIPLDAITYSAFIQGLCE ERKLIEAFDLFQEMLNMKVPPDQVTYTTLIDAYCKEGELSKALNLHDEMIQKGFLPDVVTYSVLINGLNKQARTKEAKRLLLKLYSDESIPADVMYDVLT ENCSSLEFKSVAALIKGFCIKGLMGEADRVFESMIARNHKPDESVFNIIIHGHCRWGNVQKAYELYTEMVRFGYVPHTVTVIALVKALSTEGMNDQLNLV ISYVLRSCKLSDGELSKVLVEINNNEGNMDVVFGLLESMAKDGLLPNSGASANDMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10027914 [exp]	0	1
AT3G57000			nucleolar essential protein-re...		Lus10035222 [exp]	4.1	0.7855
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10009158 [exp]	7.3	0.7799
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10028272 [exp]	20.9	0.7410
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	26.9	0.7430
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Lus10041983 [exp]	31.9	0.7044
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10031573 [exp]	36.1	0.6859
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	38.7	0.7089
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10034771 [exp]	39.0	0.7002
AT4G19020		CMT2	chromomethylase 2 (.1)		Lus10010796 [exp]	39.6	0.6651
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	41.0	0.6887

Compare expression of checked genes

Lus10027914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.