Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39710 1029 / 0 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 340 / 2e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 329 / 7e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 312 / 2e-95 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G62930 306 / 4e-94 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 305 / 1e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 309 / 1e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 300 / 5e-92 RPF2 rna processing factor 2 (.1) AT2G02150 303 / 1e-91 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G64100 300 / 1e-91 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027914 [exp] 1456 / 0 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 1448 / 0 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 333 / 5e-103 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 330 / 3e-101 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 323 / 8e-98 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 315 / 2e-94 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 305 / 2e-93 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10039056 [exp] 305 / 3e-92 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 303 / 3e-91 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105600 [exp] 1085 / 0 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 350 / 1e-109 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 333 / 2e-100 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 324 / 8e-100 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098400 [exp] 325 / 1e-99 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 322 / 2e-99 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G217600 [exp] 324 / 3e-99 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 318 / 7e-99 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G368700 [exp] 329 / 2e-98 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 319 / 5e-98 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027916 pacid=23156963 polypeptide=Lus10027916 locus=Lus10027916.g ID=Lus10027916.BGIv1.0 annot-version=v1.0 ATGCCTATTCCGAACTCTCAGATTTACCAGAGATTCTCATCCATCTCGTCGTCGGCGTCCGACGCTCTTCTAGTAGAGAGAGCTCTGCTCTTCCTCAAGC GCCACCCTTACCACCTGAATTCCATCTCCTCGGAGTTTACCCCTGAAGCAGCTTCTCAATTGCTCCTCAAATCCCAGGACGATCAAACCTTAACCCTAAA GTTCATCGACTGGGCACGGCCTCACGGGTTCTTCAACAACAACCTCCGCTGCAAATGCCTGGCGATACACATCCTGACAAGGTTCAAGCTTTACAAAACG GCACAGTCCCTCGCACAGGACATGGCCGTCTCCACCGCAGAGGAGGACGATTCAGGCAGGTTTGTGTTTCAGTGTCTGAAGGATACTTACTTTGTCTGCG ATTCGAGCTCTGCCGTGATCGATTTGGTGGTGAAGTCTTACTCTAGTCTGAACTTGACTGGTAAGGCTAGGAACATTGTTAATTTAGCTAAAGCTAATGG ATTCATGCCCGGTGTTCTTTCATACAATGCAATTCTGGATTCGATAATACGGTCCAGGAAGCCGTTTAGCTTGGCTGAAGAGGTTTACAGGGAGATGGTT GCTGGTAAGGTGTCGTTGAATGTCTATAGCTATAACATTTTGATTAGAGGGTTTTGTAGGGTTGGGAATTTGGAAATGGGGTTGAAGCTGTTTGATGAGA TGGAGAAACTAGGGTGCTTGCCTAATGTGGTTACGTACAATACAGTGATAGATAGTTACTGCAAGTTGAAGAGGATCGATGATGCATTCGGCTTGTTACG ATCGATGGCATCGAAAGGATTGGAACCAAATCTGTTTACTTTCAACATAGTTATTAATGGTTTGTGTCGGGAAGGAAGGATGAAGGAGACAGGCGAGATT CTAGCAGAGATGAAGCAGAAAGGTTATGTGCCTGATGAGGTTACTTACAATACATTGGTGAATGGATACTGCAAGGAGGGTAATTTCCACCAAGCTCTTG TGCTCCATGGGGAGATGTCGAACAACGGTTTGTCCCCTAACGTTGTTACCTTCACATCGTTGATTAATAGCATGTGCCAGGCCGGGAATCTGAAGCGAGC GATGGAATTCTTTGATCAGATGCGTGTTAGAGGGCTTCCTCCTAACGAGAGGACGTACACTACGCTGATAAATGGATTTTCGCAGCAAGGATATATGAAC GAGGCTCGTGAACTCGTGGACGAAATGAAAGGTTACGGATTCTCGCCATCGATCGTGACGTTTAACACCTTGATAAATGGATATTGTGGTCTAGGAAGGA TGGAAGATGCCACGACGGTGTTTGAAGAGATGGAAAGGGTAGGGTTTTCGCCGGATGTTGTCAGTTACAGCACTATTATATCTGGGTTTTGCCGAAATCA AGAGCTGGACAGGGCGTTTAACGTGAAGAAGGAAATGGTTCAGAAAGGTATTCCATTGGATGCCATAACGTATTCAGCATTTATTCAAGGTCTTTGTGAA GAGAGGAAATTGATTGAGGCTTGCGATCTGTTTCAAGAAATGCTGGATATGACAGTACCTCCGGATCAAGTCACTTACACAACCTTGATTGATGCCTATT GTAAAGAAGGAGAGTTGAGCAAGGCACTTAACTTGCATGACGAAATGATACAGAAGGGGTTTCTCCCCGATGTCGTTACCTACAGTGTGCTAATCAACGG ACTCAACAAGCAAGCTCGTACTAAGGAAGCGAAGAGGCTATTGCTGAAGCTTTACTCTGATGAATCCATCCCGGCTGATGTCATGTACGACGTCCTTACA GAAAACTGCAGCAGCTTGGAATTCAAGAGCGTGGCGGCTCTGATAAAGGGATTCTGTATAAAGGGTTTGATGGGAGAAGCAGATAGAGTGTTTGAATCGA TGATTGCAAGAAACCACAAGCCTGATGAATCGGTCTTCAACATCATCATACACGGTCATTGCAGATGGGGAAATGTTCAGAAGGCTTATGAACTGTATAC GGAAATGGTTCGATTCGGTTATGTTCCTCACACTGTGACTGTTATTGCTTTGGTTAAGGCGCTTTCCACTGAAGGGATGAACGATCAGTTGAACCTTGTC ATCAGTTACGTGCTGAGAAGCTGCAAGCTTAGTGATGGTGAGCTTTCTAAAGTACTTGTGGAAATCAATAACAATGAAGGGAATATGGACGTGGTTTTCG GTTTGCTTGAATCGATGGCCAAGGATGGCCTTCTTCCGAATAGTGGGGCCTCTGCCAACGACATGGTATGA
AA sequence Show only first row Show all	>Lus10027916 pacid=23156963 polypeptide=Lus10027916 locus=Lus10027916.g ID=Lus10027916.BGIv1.0 annot-version=v1.0 MPIPNSQIYQRFSSISSSASDALLVERALLFLKRHPYHLNSISSEFTPEAASQLLLKSQDDQTLTLKFIDWARPHGFFNNNLRCKCLAIHILTRFKLYKT AQSLAQDMAVSTAEEDDSGRFVFQCLKDTYFVCDSSSAVIDLVVKSYSSLNLTGKARNIVNLAKANGFMPGVLSYNAILDSIIRSRKPFSLAEEVYREMV AGKVSLNVYSYNILIRGFCRVGNLEMGLKLFDEMEKLGCLPNVVTYNTVIDSYCKLKRIDDAFGLLRSMASKGLEPNLFTFNIVINGLCREGRMKETGEI LAEMKQKGYVPDEVTYNTLVNGYCKEGNFHQALVLHGEMSNNGLSPNVVTFTSLINSMCQAGNLKRAMEFFDQMRVRGLPPNERTYTTLINGFSQQGYMN EARELVDEMKGYGFSPSIVTFNTLINGYCGLGRMEDATTVFEEMERVGFSPDVVSYSTIISGFCRNQELDRAFNVKKEMVQKGIPLDAITYSAFIQGLCE ERKLIEACDLFQEMLDMTVPPDQVTYTTLIDAYCKEGELSKALNLHDEMIQKGFLPDVVTYSVLINGLNKQARTKEAKRLLLKLYSDESIPADVMYDVLT ENCSSLEFKSVAALIKGFCIKGLMGEADRVFESMIARNHKPDESVFNIIIHGHCRWGNVQKAYELYTEMVRFGYVPHTVTVIALVKALSTEGMNDQLNLV ISYVLRSCKLSDGELSKVLVEINNNEGNMDVVFGLLESMAKDGLLPNSGASANDMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10027916 [exp]	0	1
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Lus10012221 [exp]	1.4	0.8407
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10030202 [exp]	6.7	0.7819
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10002684 [exp]	11.0	0.7802
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Lus10007747 [exp]	21.9	0.8028
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	21.9	0.7253
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030586 [exp]	22.6	0.7445
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10029109 [exp]	24.8	0.7599
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	27.5	0.6967
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10016846 [exp]	30.8	0.6757
AT4G11790			Pleckstrin homology (PH) domai...		Lus10029606 [exp]	42.1	0.6732

Compare expression of checked genes

Lus10027916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.