Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 135 / 3e-35 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72910 121 / 2e-31 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72920 119 / 2e-31 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT1G72930 116 / 2e-31 TIR toll/interleukin-1 receptor-like (.1.2) AT1G27170 123 / 7e-31 transmembrane receptors;ATP binding (.1.2) AT1G72940 119 / 1e-30 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72950 118 / 4e-30 Disease resistance protein (TIR-NBS class) (.1) AT1G72860 119 / 1e-29 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 115 / 2e-28 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72890 114 / 2e-28 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026845 [exp] 298 / 6e-101 AT5G36930 145 / 8e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041606 [exp] 284 / 5e-95 AT5G36930 140 / 5e-37 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012063 [exp] 260 / 3e-86 AT5G36930 124 / 5e-34 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10006929 [exp] 157 / 5e-46 AT1G72890 146 / 1e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10014671 [exp] 148 / 1e-42 AT5G36930 144 / 4e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10006928 [exp] 152 / 8e-42 AT5G36930 165 / 5e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041605 [exp] 143 / 9e-42 AT1G72940 93 / 3e-22 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) Lus10029921 [exp] 145 / 3e-40 AT5G36930 105 / 7e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042020 [exp] 146 / 6e-40 AT1G72890 147 / 3e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001314 [exp] 145 / 1e-41 AT5G36930 183 / 1e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G098550 [exp] 152 / 5e-41 AT5G17680 593 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G096849 [exp] 140 / 1e-40 AT5G36930 167 / 4e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 147 / 5e-40 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.017G105501 [exp] 138 / 5e-40 AT5G36930 158 / 4e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G097000 [exp] 149 / 8e-40 AT5G17680 571 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069200 [exp] 148 / 1e-39 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.005G004233 [exp] 140 / 1e-39 AT1G27170 153 / 8e-42 transmembrane receptors;ATP binding (.1.2) Potri.019G019710 [exp] 145 / 3e-39 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G004500 [exp] 138 / 3e-39 AT5G36930 152 / 3e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10027920 pacid=23157004 polypeptide=Lus10027920 locus=Lus10027920.g ID=Lus10027920.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCCGCTCTAGTAGCACTACTGGTTTTGCTTCTCAGTTTCATGACCCTACAGCTGGCAAACGCCAAAGCGCAATCCTTGGAACCAAACACCC GCCGTCAATACGATAACCCAGCAGCAGCAGCAGCAGCAGCCGCAACAGATTACACCGTTCCGCCACCTCCACCGTGGCGTTACCACGTGTTCCTGAATTT CCGGGGGCTCGACGTCCGCCACAGCTTCAGAGACCATCTCTACCACGCGCTGGCGCGGAGAGAGATCAAGGCCTTCCGCGACGATCGGGACCTGCCACGT GGAGAAAAGATCGAAGAGGCGATCTCGCGCGCTATCGAGGGGTCGATGATGTCAATCGCGGTTCTGTCCAAAGGATACGCGTCGTCAGAATGGTGCTTGG ACGAGTTGGTTAAGATGGTGGCGGCTGCCGCCGGCGACAATTACGTCAACGACGATAAGGCGGCTACTATGGCCATTCACCACCAGATTTTCCCGGTGTT TTACAAAGTTTCTCCCGATGAAGTGGCCGATCAGTCGTCGGGGTGCTACAAGGAAGACTTCGATTCGCACAAGAGGAAGTTCAGCTACGAGCGAGTGGAC AATTGGCGTCACGCTCTCACTTCCATTGCTGAATTTTCCGGCTGGGTTATCGACCCTAACGGCGACCGGTCGGAAGCGGAAATGGTCGAGGACATAGCCG AGTACATATTACGGAAGGTCCACCAGCTGCTGCCTGCTGGGTACGAATCCGACTCCATCGCTAGTACTGGATTGCTGTGCGAAGGAACGTTTGCAGATCG ATGTTCCTGGAACACGGCCTCCGAGGAGCTGAGCTACATAGCCAGTGCGATTGGGAAGCCAGTTGGGGAGGATATATGTAATAAACAAGGAGGAGGAGAA GTGGTAGTAAGTAGTTGTGAGGGGTCTCCTCCACCCAATCACGACGACGACGACGACGACGACTTCTTCATAAATGAATAA
AA sequence Show only first row Show all	>Lus10027920 pacid=23157004 polypeptide=Lus10027920 locus=Lus10027920.g ID=Lus10027920.BGIv1.0 annot-version=v1.0 MAAAALVALLVLLLSFMTLQLANAKAQSLEPNTRRQYDNPAAAAAAAATDYTVPPPPPWRYHVFLNFRGLDVRHSFRDHLYHALARREIKAFRDDRDLPR GEKIEEAISRAIEGSMMSIAVLSKGYASSEWCLDELVKMVAAAAGDNYVNDDKAATMAIHHQIFPVFYKVSPDEVADQSSGCYKEDFDSHKRKFSYERVD NWRHALTSIAEFSGWVIDPNGDRSEAEMVEDIAEYILRKVHQLLPAGYESDSIASTGLLCEGTFADRCSWNTASEELSYIASAIGKPVGEDICNKQGGGE VVVSSCEGSPPPNHDDDDDDDFFINE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10027920 [exp]	0	1
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10033799 [exp]	1.4	0.8095
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10026606 [exp]	5.0	0.7545
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10028492 [exp]	9.8	0.7417
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034502 [exp]	13.8	0.7809
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015644 [exp]	21.5	0.6224
AT5G66930			unknown protein		Lus10000838 [exp]	26.9	0.7131
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10020091 [exp]	27.0	0.7682
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10042210 [exp]	27.2	0.7580
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011980 [exp]	28.3	0.7192
					Lus10001144 [exp]	35.5	0.7320

Compare expression of checked genes

Lus10027920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.