Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33940 210 / 5e-68 RING/U-box superfamily protein (.1) AT1G72175 133 / 1e-38 RING/U-box protein with domain of unknown function (DUF 1232) (.1) AT1G22510 120 / 6e-34 RING/U-box protein with domain of unknown function (DUF 1232) (.1), RING/U-box protein with domain of unknown function (DUF 1232) (.2) AT3G07200 43 / 5e-05 RING/U-box superfamily protein (.1.2) AT5G48655 42 / 0.0001 RING/U-box superfamily protein (.1.2.3) AT2G42030 40 / 0.001 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012062 [exp] 359 / 1e-126 AT4G33940 252 / 2e-84 RING/U-box superfamily protein (.1) Lus10014366 [exp] 236 / 8e-76 AT4G33940 189 / 2e-57 RING/U-box superfamily protein (.1) Lus10020349 [exp] 157 / 4e-48 AT1G72175 261 / 8e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Lus10009529 [exp] 157 / 5e-48 AT1G72175 261 / 5e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Lus10004467 [exp] 42 / 0.0002 AT3G05250 288 / 9e-98 RING/U-box superfamily protein (.1) Lus10022774 [exp] 40 / 0.0007 AT5G48655 153 / 7e-47 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143900 [exp] 215 / 4e-70 AT4G33940 221 / 2e-72 RING/U-box superfamily protein (.1) Potri.019G078800 [exp] 149 / 8e-45 AT1G72175 259 / 3e-89 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Potri.013G105400 [exp] 148 / 1e-44 AT1G72175 263 / 5e-91 RING/U-box protein with domain of unknown function (DUF 1232) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027921 pacid=23156921 polypeptide=Lus10027921 locus=Lus10027921.g ID=Lus10027921.BGIv1.0 annot-version=v1.0 ATGGCGTCGGGATCGGCGGAGGAAGTCGGTACCGGTATCACTGGTCTCATTTCTGGCGGAAATGGCGGTGTAAGCGAGAGGATCGCGGTTGAGGCGGAAG AAGAAGAAGAAGGAGAAGCGACGGAAGCTGACGAGTTTGTGAGAAACCCTAACGGTACGGGAAATGATGGCCCTCCTGTCGACGATTGCTGCCCGATCTG CTTCGGAGAGTTTGCGGTCGCTTGTAAAGCTAATTGCGGTCATTGGTATTGCGGAGGCTGCATCCTCCAGTTCTGGAACTACTCTGCAGCATCAAGACCA TGCAAATGCCCGATGTGCTCTGCCAGCATTACCAATCTGACGCCAGAGGCATCCTTACTCAACCGACAAGAGAAGGAAGTTACGGAGGTTCTGCGTGAGG TCGAGAGGTATAATCGACTCTATGTTGGTGGTGCTCGTGGCCTTGTTCAGAAAGTGCGCGAATCACCATTGTTCATCAAACGTATTGTTATACGGATGAT GGATCCTGATCGGCCTGAGTACTTTCTTCAGGAAGCACGACTTTTGGCTATGATTATGAGTGCTCTCTACGCTTTCTCTCCATTCGAATTCATTCCAATA AACGGTGCAGGAGTAGTGAGACTGTTCGACCATGTTGCGATAATAATCGTTCTCGGGTTGCGCCTCATTGGCCTCTACCGTAGGCGCAGGCTTAACCAGC GAGTTCGGCATATGGCTGCTGCTCAACCACTAGCTGAGTGA
AA sequence Show only first row Show all	>Lus10027921 pacid=23156921 polypeptide=Lus10027921 locus=Lus10027921.g ID=Lus10027921.BGIv1.0 annot-version=v1.0 MASGSAEEVGTGITGLISGGNGGVSERIAVEAEEEEEGEATEADEFVRNPNGTGNDGPPVDDCCPICFGEFAVACKANCGHWYCGGCILQFWNYSAASRP CKCPMCSASITNLTPEASLLNRQEKEVTEVLREVERYNRLYVGGARGLVQKVRESPLFIKRIVIRMMDPDRPEYFLQEARLLAMIMSALYAFSPFEFIPI NGAGVVRLFDHVAIIIVLGLRLIGLYRRRRLNQRVRHMAAAQPLAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33940			RING/U-box superfamily protein...		Lus10027921 [exp]	0	1
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10014929 [exp]	3.0	0.7513
AT2G31820			Ankyrin repeat family protein ...		Lus10008329 [exp]	3.7	0.6932
AT4G19390			Uncharacterised protein family...		Lus10037258 [exp]	11.7	0.6913
AT1G16840			unknown protein		Lus10034821 [exp]	14.7	0.6417
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10029939 [exp]	20.0	0.6656
AT4G32600			RING/U-box superfamily protein...		Lus10013144 [exp]	21.8	0.5779
AT5G42000			ORMDL family protein (.1.2)		Lus10003209 [exp]	24.6	0.6445
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10002872 [exp]	25.1	0.6818
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10020286 [exp]	31.2	0.6232
AT3G08890			Protein of unknown function, D...		Lus10002862 [exp]	34.4	0.6892

Compare expression of checked genes

Lus10027921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.