Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43650 266 / 1e-79 EMB2777 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1) AT3G28230 69 / 2e-13 unknown protein AT1G07840 68 / 4e-12 Sas10/Utp3/C1D family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012061 [exp] 763 / 0 AT2G43650 400 / 2e-131 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1) Lus10029397 [exp] 64 / 1e-10 AT1G07840 248 / 7e-81 Sas10/Utp3/C1D family (.1.2.3) Lus10004194 [exp] 54 / 3e-07 AT5G06350 432 / 3e-136 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G125800 [exp] 281 / 9e-85 AT2G43650 401 / 6e-131 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1) Potri.005G152200 [exp] 75 / 3e-14 AT1G07840 298 / 9e-101 Sas10/Utp3/C1D family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09368 [flax] [poplar] Sas10 Sas10 C-terminal domain PF04000 [flax] [poplar] Sas10_Utp3 Sas10/Utp3/C1D family
Representative CDS sequence Show only first row Show all	>Lus10027922 pacid=23157039 polypeptide=Lus10027922 locus=Lus10027922.g ID=Lus10027922.BGIv1.0 annot-version=v1.0 ATGGGCCAGGCTCACATGCTCTTTAGTCCGCCCGATAGGCCGACCCGTAATTTAAAGTACAAACTAGGTCGAAACTCAGACATAGACGACTCTCTCCCGA TTCACTCTTTCTTCGCCACTCCTCCGTCTCCCGCCACAATTGTCACCACCGCCGCCGCCGCCGCCGCCGCACTTCTTCCGACTGTTCACAAGCAAAGAGA TATTGTTCCACTTGATTTGGATGATGATTTTGGAGATTCCAGTGGTAGTGATGATGAACTCCCGGTTTTGGGTGATAAGGACATCAAGGATGATACTAGC GACGAGGACGAAGATTATGGTGACGATGATGATGTTGAGGATGATGTTAACGAGAAGGGATTGGTAGGAAAAATGGCGAGACAACTAAAGTACTTGCGAG AAAAGTTTCCCGGAGTTGATGAAATGAAAGATGGGGAAGACGAAGATGAGGAGGAAGAAAAACATACATGGACTGGGAAAGGGACCTTACACGGTGGTGA CAATCGTGATATTGAACTCGATTCGAGTGACGAGGAGGACATTCAAGAAGAAGAGAATGAGGTTGTAAGGCTACAGAAGGAAAAAGCAGGATCATTGTCA GTGGCAGACTTTGGTATTGAAGATTTGAGTGGAAATGAGAGGGACCAAGAACTATCATTAGAGGCAAAGTCCGTGGGAAAGAAAATCTCAGGCAAAGTCA TTTCAACTGAAGAATCTGCTGACCCTAAACATTGGAATACATTATCTCGGGAAGAGCAAATGAACGTTGTATACAGTTCTGCTCCGGAGTTAGTCGGACT GCACTCTGAGCTGAATGGTGCACTTGAACAGCTTGAAACACGAATCAATCCAGCTTTAGACAAGGCAAAAGAACTTGGAATTCCTACGAATGGTGGACTT CGCTTGTTGGAGACCAACCAACAAATTTTGATGGTATATTGCCAATATATAACATTCTATCTACTGCTCAAATCTGAAGGTCTTCCAGTTAATGACCATC CTGTCATCGAGCGGCTTGTAGACATCAAAAGCTTATTGGATAAGATGAACCATCTAGGTGGAGATCTTCCAGTGAAGCTGGACGAGTTTCTGAAGAAGAA CATAAGCCCTGAAGCTCTTCACAATTTCATTAAAAAGGATGCTGCTGAAGTTTTGGAATCCGACAATTTGGTAAAGGAGCATAATCCTTCTATAGTCTCT GAGCCACACCATACAAATGTGGTGAAAGAAGTCAAAGAAGGAAAACGCAAGCGCAAGAATGATGACGACATTGGTGTTGAGAGTACAGAAATGCTGAGAG CCCGAGCAGTACTGGAAGAAAAACTGAAGCAAAAGGGTGCCTTCAGTATAGTTTCTCCAGATGCGCTTAATAAAGTTCAGAAGAAGCCTAAACTGGCAAA TGGGAGGCTCGAGACACGTGATGATTTCGATGATGATACGGGTGATCTCGTAAACAGAAACCATGTTACACCAGGAGGGGGCGTGCAAACCAACTTATAT TCAAAGAAGCTGAAGGTTATCTCCGGTGATGAAGATATACCCAGGAGAGATGATATCGGCGAAAGGAGGAGGAAACATGAAATGAGAGTGCTGGCCACTG CCGGAATAAAGTCGTCAGCTGGAGGTGACGATGATGAACTTAACAATGTAAAAGATGACGACGATGATGACAACGCATCAGAGGAGAAAGGAAGTGATTC TGCTGACGAAAGCTCGGAAGATGAAGACGAATCGGAAGATGTTAAATCAGTTGCTACGAAATCTGATAAAAGGAACGCAAGAGCGGCAGCTGCTACGGCA TCGTTGCCTGAAACAGTGGTCGGGAAACGACCGATCACTAATCCGATAAAGACAAACAGAGGGTTGACCCGACAGCGGAACAAGTCGAGAAAGAATCCGA GGAAGAACAACAGGTTGAAGCATGAAAAGGCAGAGAAGAGGAGGAAAGGGCAAGTCGTTAACATCAAGAAGCAATCGGGTCCTTACGGAGGGGAGGTTTC TGGCATCAACCCAACAATCAGTCGAAGCGTTCGAATGTCGAATTAA
AA sequence Show only first row Show all	>Lus10027922 pacid=23157039 polypeptide=Lus10027922 locus=Lus10027922.g ID=Lus10027922.BGIv1.0 annot-version=v1.0 MGQAHMLFSPPDRPTRNLKYKLGRNSDIDDSLPIHSFFATPPSPATIVTTAAAAAAALLPTVHKQRDIVPLDLDDDFGDSSGSDDELPVLGDKDIKDDTS DEDEDYGDDDDVEDDVNEKGLVGKMARQLKYLREKFPGVDEMKDGEDEDEEEEKHTWTGKGTLHGGDNRDIELDSSDEEDIQEEENEVVRLQKEKAGSLS VADFGIEDLSGNERDQELSLEAKSVGKKISGKVISTEESADPKHWNTLSREEQMNVVYSSAPELVGLHSELNGALEQLETRINPALDKAKELGIPTNGGL RLLETNQQILMVYCQYITFYLLLKSEGLPVNDHPVIERLVDIKSLLDKMNHLGGDLPVKLDEFLKKNISPEALHNFIKKDAAEVLESDNLVKEHNPSIVS EPHHTNVVKEVKEGKRKRKNDDDIGVESTEMLRARAVLEEKLKQKGAFSIVSPDALNKVQKKPKLANGRLETRDDFDDDTGDLVNRNHVTPGGGVQTNLY SKKLKVISGDEDIPRRDDIGERRRKHEMRVLATAGIKSSAGGDDDELNNVKDDDDDDNASEEKGSDSADESSEDEDESEDVKSVATKSDKRNARAAAATA SLPETVVGKRPITNPIKTNRGLTRQRNKSRKNPRKNNRLKHEKAEKRRKGQVVNIKKQSGPYGGEVSGINPTISRSVRMSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10027922 [exp]	0	1
AT2G18850			SET domain-containing protein ...		Lus10006953 [exp]	1.7	0.9338
AT5G02610			Ribosomal L29 family protein ...		Lus10019179 [exp]	3.3	0.9437
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10019634 [exp]	8.5	0.9237
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	9.7	0.9362
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	10.0	0.9120
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	12.2	0.9274
AT3G56510			RNA-binding (RRM/RBD/RNP motif...		Lus10032099 [exp]	13.9	0.9100
AT1G60200			splicing factor PWI domain-con...		Lus10029161 [exp]	14.5	0.8881
AT5G56710			Ribosomal protein L31e family ...		Lus10015698 [exp]	17.9	0.9230
AT2G18410			unknown protein		Lus10028481 [exp]	18.6	0.9051

Compare expression of checked genes

Lus10027922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.