Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33945 489 / 1e-170 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012060 [exp] 715 / 0 AT4G33945 445 / 1e-154 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G144100 [exp] 623 / 0 AT4G33945 543 / 0.0 ARM repeat superfamily protein (.1) Potri.009G106100 [exp] 613 / 0 AT4G33945 576 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027923 pacid=23156892 polypeptide=Lus10027923 locus=Lus10027923.g ID=Lus10027923.BGIv1.0 annot-version=v1.0 ATGGCTCCTTCGAGCAAGAACATACGAACGATCTCCCAAGAAGCATTCGACGAGCTGGTGAAGGAGAACATGGACGATCTCGATATGGAGCCTTCCGAAG CTCTGGAAGACGCCGTACAATCCCTCACCCTCCAAGGCGTCGATCTCTCCGGTAAACTTCCTCTCACTCCGACTCTCTGTACCGCTTGTCTCTACTTCTC GTACGATTCCAATCGGTTTCAGTTTTCACAATCTTTTGTTTCGGTAGGGATTGTTAAGTGTGTTCCTGGTGAGGAGAGCGCGGTGATGAAGTACGTTGCG ATATTGAAGGCGCTGGCGAGCAGCGGAATCGATCAGAACGACCCCGAAGAGGTTTCTGGCTTGTTAAGGAAGCTGATCGACGAGTGTATCGTCGGAGAAG GATCTGGAAATGCAGCGGTAGCTGTGAGGAACGGCGGAGTGGAATCGGTCGTTGCTCTATGTTCGAGGATTCCGATCAAGTCTTCCGAGCAGATTCTCGT GCTAGCTTTCAAAGCTCTATCACTGTTACTTCACGACATTGAGAGTACGGAGAAGTTCCGTTCAAGCGGTGGACCGGCAGTTGTGGCTGGCTACTTGAAG GAAGGAAGTAAGAGCTTGGAGATCTTGAGTAGTGGCTTTAGCGTTGTTGCTCAGGCGGCAACTTCAAACGAAGTTGTTAAGCAGTCATTCATGGAGTTGA AAATTGACGAGGTTATATTGCAAGTGCTGAATGAACAGAAGAAAGGGAGTGTGCAGAGCTTGTATGATGCCATACGCATTCTTCTAACTCCAGACGACAA TCGAGTTCTTGCTTCCGAAGTCTACGGATACGCTCGAAGGTTTGCGAAGATTGGTATTCCGGTAGCTCTCGTAGAATCTCTACATGCAGGCCTTGCGTCT CCGAGTTTAGTTTCGGCATGCATAGCTTTGAAAGCCGTTGCTGTTAATGATGAAATATGCAAATCGATCGCTGAGAGTGGAGGCATTGATGTGATCCTGA AATGTATTGAAGACAGTGGTGAACATGGGCACATTGATGTTGCTCGAACGTGCTGCTCTTTGCTAGCTAAGTTGGCAGGAAGTGACTCGAACAAGACCGC CATTGTTGAGAAGAAGGGTATGGTTAAGCTAATCCAGTTATCATCAAGATTCTCTGACGACCCTTCTGTCTTGCTAGAGGTTATGCCGATCTTCACTGTT CTCTGCCTAAGATATCCCGACAATGCCGCCCGTGCAATGGAGGCCGGAGCAGGTGACCTTGCATTCCAAGCCATGGAGAATTTCCCTACAACGCCACTTT TGCAGCGTAATGCTTGCATGATGATCCGAAATCTCGCTGTCAGGAACCCTGAAAATCGAACTCTGCTACTCAGCCAAGGCATTGATAAGCTCATAAGACG AGCCAGGGAAAACCATGGAAGCTGCAAGGATGCAGCCACTGATGCTTTAAGGGACTTGGGACTCGATAACTACAAGTCATAA
AA sequence Show only first row Show all	>Lus10027923 pacid=23156892 polypeptide=Lus10027923 locus=Lus10027923.g ID=Lus10027923.BGIv1.0 annot-version=v1.0 MAPSSKNIRTISQEAFDELVKENMDDLDMEPSEALEDAVQSLTLQGVDLSGKLPLTPTLCTACLYFSYDSNRFQFSQSFVSVGIVKCVPGEESAVMKYVA ILKALASSGIDQNDPEEVSGLLRKLIDECIVGEGSGNAAVAVRNGGVESVVALCSRIPIKSSEQILVLAFKALSLLLHDIESTEKFRSSGGPAVVAGYLK EGSKSLEILSSGFSVVAQAATSNEVVKQSFMELKIDEVILQVLNEQKKGSVQSLYDAIRILLTPDDNRVLASEVYGYARRFAKIGIPVALVESLHAGLAS PSLVSACIALKAVAVNDEICKSIAESGGIDVILKCIEDSGEHGHIDVARTCCSLLAKLAGSDSNKTAIVEKKGMVKLIQLSSRFSDDPSVLLEVMPIFTV LCLRYPDNAARAMEAGAGDLAFQAMENFPTTPLLQRNACMMIRNLAVRNPENRTLLLSQGIDKLIRRARENHGSCKDAATDALRDLGLDNYKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33945			ARM repeat superfamily protein...		Lus10027923 [exp]	0	1
AT3G06890			unknown protein		Lus10006514 [exp]	11.1	0.7808
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	11.5	0.8452
AT1G24160			unknown protein		Lus10003514 [exp]	12.8	0.8332
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	13.4	0.8368
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10000646 [exp]	19.7	0.8204
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	25.9	0.8124
AT5G58300			Leucine-rich repeat protein ki...		Lus10034446 [exp]	30.7	0.7265
AT3G17430			Nucleotide-sugar transporter f...		Lus10017115 [exp]	32.2	0.7925
AT3G18600			P-loop containing nucleoside t...		Lus10009616 [exp]	37.0	0.8179
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10030690 [exp]	44.4	0.8170

Compare expression of checked genes

Lus10027923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.