Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15790 464 / 6e-165 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT3G63400 174 / 5e-51 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT3G56070 166 / 1e-50 ROC2 rotamase cyclophilin 2 (.1.2) AT4G38740 166 / 2e-50 ROC1 rotamase CYP 1 (.1) AT2G21130 165 / 3e-50 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G34870 163 / 2e-49 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G29960 158 / 4e-47 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT2G16600 157 / 4e-47 ROC3 rotamase CYP 3 (.1.2) AT3G55920 155 / 7e-46 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G58710 152 / 9e-45 ROC7 rotamase CYP 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012059 [exp] 550 / 0 AT2G15790 596 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10020992 [exp] 481 / 2e-171 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10023860 [exp] 479 / 9e-171 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10007579 [exp] 162 / 4e-49 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 161 / 1e-48 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10022012 [exp] 160 / 4e-48 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 160 / 5e-48 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10017258 [exp] 159 / 6e-48 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10018746 [exp] 170 / 9e-48 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106200 [exp] 479 / 5e-171 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.004G144300 [exp] 474 / 4e-169 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.005G135500 [exp] 457 / 3e-162 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.007G040100 [exp] 441 / 5e-156 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.004G168800 [exp] 165 / 3e-50 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 164 / 1e-49 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.019G014396 [exp] 163 / 1e-49 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.005G240200 [exp] 162 / 4e-49 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.002G021500 [exp] 160 / 1e-48 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.005G215800 [exp] 169 / 3e-47 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10027924 pacid=23157015 polypeptide=Lus10027924 locus=Lus10027924.g ID=Lus10027924.BGIv1.0 annot-version=v1.0 ATGGGAACTTTGGTGAGCAACGGAGGGAAAATGGGCCGGACGAGATGCTTCTTCGACATAAGCATCGGCGGAGAGTTGGAAGGCCGGATTGTGATTGAGC TGTTCAACGACGTCGTTCCCAGAACTGCAGAGAATTTCAGAGCACTCTGCACCGGAGAGAAAGGCATCGGTCCCAACACCGGCGTCCCTCTCCATTTCAA GGGAAGCCGGTTTCATCGAGTCATCAAAGGGTTCATGGCGCAAGGAGGAGACATCTCAGCAGGGGACGGTACCGGAGGGGAATCCATCTACGGAATGAAC TTCGAGGACGAGAATTTCGAGATGAAGCACGAGAGGAAAGGAATACTGTCCATGGCGAATTCGGGCCCCAACACAAATGGTTCTCAGTTCTTCATCACCA CCACTCGAACATCTCACTTGGATGGGAAGCATGTCGTGTTCGGCAAAGTCGTGAAAGGAATGGGAGTCGTTAGGTCGGTTGAGCATGTCCCTACTGACAA CGATGGAAACGTTCCGGTTTTTGATGTTGTGATTTCCGACTGCGGCGAGATCCCTGAAGGTGGAGATGACGGCATAACGAACTTCTTCAACGATGGGGAT TCGTTCCCCGATTGGCCGGCTGACCTTAATGACAGCCCCAAGGAGCTGTCGTGGTGGATTGATTCTGTCAATTCGATTAAGGCCTTTGGTAATGACCATT TCAAGAAACAAGACTATAAGATGGCTCTGAGAAAGTATCGGAAGGCGCTTCGCTATCTGGATATTTGTTGGGAGAAAGAAGGCATAGATGAAGAGAAGAG TTCAGCACTGAGGAAGACGAAGTCTCAGATTTTCACTAACAGCTCTGCCAGCAAACTAAAAATGGGGGACATCAAAGGAGCATTGCTAGACACAGATTTC GCAATGCGCGAGGGAGAAAACAACGTGAAAGCCCTATTTCGACAGGGACAGGTTGACTCCGGTCAACATTCGTTCGCTTTGTTTGAGTGTTATCCCAGTT AA
AA sequence Show only first row Show all	>Lus10027924 pacid=23157015 polypeptide=Lus10027924 locus=Lus10027924.g ID=Lus10027924.BGIv1.0 annot-version=v1.0 MGTLVSNGGKMGRTRCFFDISIGGELEGRIVIELFNDVVPRTAENFRALCTGEKGIGPNTGVPLHFKGSRFHRVIKGFMAQGGDISAGDGTGGESIYGMN FEDENFEMKHERKGILSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSVEHVPTDNDGNVPVFDVVISDCGEIPEGGDDGITNFFNDGD SFPDWPADLNDSPKELSWWIDSVNSIKAFGNDHFKKQDYKMALRKYRKALRYLDICWEKEGIDEEKSSALRKTKSQIFTNSSASKLKMGDIKGALLDTDF AMREGENNVKALFRQGQVDSGQHSFALFECYPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10027924 [exp]	0	1
AT1G56230			Protein of unknown function (D...		Lus10029871 [exp]	1.0	0.8955
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	1.4	0.8783
AT3G10330			Cyclin-like family protein (.1...		Lus10035440 [exp]	3.0	0.8363
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	6.3	0.8230
AT3G14280			unknown protein		Lus10037453 [exp]	6.3	0.8360
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10004913 [exp]	8.1	0.7618
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10008227 [exp]	11.7	0.8191
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032750 [exp]	13.5	0.7995
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	14.7	0.8136
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017650 [exp]	16.1	0.8059

Compare expression of checked genes

Lus10027924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.