Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19090 288 / 4e-94 RNA-binding protein (.1) AT2G43970 156 / 5e-43 RNA-binding protein (.1.2) AT5G46250 139 / 3e-38 RNA-binding protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012058 [exp] 486 / 3e-171 AT3G19090 427 / 2e-146 RNA-binding protein (.1) Lus10027080 [exp] 197 / 2e-58 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2) Lus10025608 [exp] 197 / 4e-58 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10023315 [exp] 137 / 6e-37 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10038494 [exp] 134 / 5e-36 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10022135 [exp] 47 / 2e-05 AT4G32720 389 / 6e-133 La protein 1 (.1.2) Lus10011685 [exp] 47 / 2e-05 AT4G32720 382 / 1e-128 La protein 1 (.1.2) Lus10038624 [exp] 45 / 8e-05 AT4G32720 360 / 3e-121 La protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G144700 [exp] 298 / 1e-98 AT3G19090 363 / 3e-122 RNA-binding protein (.1) Potri.009G106500 [exp] 290 / 9e-96 AT3G19090 348 / 1e-116 RNA-binding protein (.1) Potri.007G144800 [exp] 192 / 6e-57 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.017G007400 [exp] 174 / 4e-50 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.011G080700 [exp] 125 / 7e-33 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0123 [flax] [poplar] HTH PF05383 [flax] [poplar] La La domain
Representative CDS sequence Show only first row Show all	>Lus10027925 pacid=23157083 polypeptide=Lus10027925 locus=Lus10027925.g ID=Lus10027925.BGIv1.0 annot-version=v1.0 ATGGCGCAACTACCTCAACCGGAGAAGAAGAACACCGATCACAACTACGAACCTTCTTCGTCTTCTTCTTCCTCCATGATCACAACCGCCATGATGAAGG AGAACGCCAAGCCTCCGCCTACCACCCCAACCGCCATGGCGGGGAGCAGCGGCGGTTGCATGCCAATATCAGTTATTGCTTCCACAAAGAAAATGAAGTC TCTTACAAGTAACCATCATTTGATCTCTCAGGCACTCAAGTCTTCTCCAAAACTCGTTGTGAATGAAGATGGAAGGAAGGTCAGACGGAAGATCCCATTC ACAGAGAAAGATAGAGAAGAGCTGCAGTCTCGTACCGTGGTAGTGGAGAATTTGCCTGATGATCACTCTCATCAAAACCTCGAGAAGATATTCGGCATCA TTGGAAGTGTGAAAACCATCAGGATATGCCACCCTCAGGAATCAAACTCGTCTCGATCTAAAAGTGATTTCTTCATGAGCAACAAGCTTCATGCACTAGT GGAGTTTGAGACACCGGATGTAGCTGAGAAAGCGGTTGAGAAACTGAATGATGAAAGGAATTGGAGAAAAGGGCTTCGTGTCAGGTTGCTCTTTAGATGT TCGCCGAAATCAGTCCTGAAGAGCCGAAAATCGGAGTTCGATGGCATATTGGACGACGAAGAGGGACCGTTCTCCGGTTCACTTGATGATATCTCCATCC CACACATTACAGATCTCACTTCGGAGTCAAATGTGGACGAGAGCTCAGGATCATTCAAGAAGGGTCCCGGAAGCGCGAGAGGACGAGGGAAAGGAAGAGG AAGTCGTCTGCAGAGCTACGGCAGTGGAGGGAGAGGCCTTCTGCTATCTCCATCTCCGCAAGATATAAACAGCAGTGGTTCTCCATTTGAGGCTTCTGGT AGTAATAAACCATTTGGTGGTGGTTTCAACAAAGGACCAAGAATGCCTGATGGAACCAGGGGGTTCACCATGGGGAGAGGAAAGCCCCTGGCTTCTCCTG TTGTTGCTGCTGCTGCAGCAATGGTGGAATGA
AA sequence Show only first row Show all	>Lus10027925 pacid=23157083 polypeptide=Lus10027925 locus=Lus10027925.g ID=Lus10027925.BGIv1.0 annot-version=v1.0 MAQLPQPEKKNTDHNYEPSSSSSSSMITTAMMKENAKPPPTTPTAMAGSSGGCMPISVIASTKKMKSLTSNHHLISQALKSSPKLVVNEDGRKVRRKIPF TEKDREELQSRTVVVENLPDDHSHQNLEKIFGIIGSVKTIRICHPQESNSSRSKSDFFMSNKLHALVEFETPDVAEKAVEKLNDERNWRKGLRVRLLFRC SPKSVLKSRKSEFDGILDDEEGPFSGSLDDISIPHITDLTSESNVDESSGSFKKGPGSARGRGKGRGSRLQSYGSGGRGLLLSPSPQDINSSGSPFEASG SNKPFGGGFNKGPRMPDGTRGFTMGRGKPLASPVVAAAAAMVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19090			RNA-binding protein (.1)		Lus10027925 [exp]	0	1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039513 [exp]	1.0	0.9272
					Lus10039943 [exp]	1.4	0.8737
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10021345 [exp]	4.7	0.8394
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10022660 [exp]	5.0	0.7089
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10042512 [exp]	6.2	0.8717
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10036880 [exp]	6.9	0.8010
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	8.2	0.8582
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10031239 [exp]	8.7	0.8075
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	9.2	0.8582
AT1G03620			ELMO/CED-12 family protein (.1...		Lus10018574 [exp]	9.8	0.7114

Compare expression of checked genes

Lus10027925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.