Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03500 56 / 2e-08 GARP Homeodomain-like superfamily protein (.1) AT4G37180 47 / 1e-05 GARP Homeodomain-like superfamily protein (.1.2) AT1G25550 43 / 0.0002 GARP myb-like transcription factor family protein (.1) AT1G68670 42 / 0.0005 GARP myb-like transcription factor family protein (.1) AT1G13300 41 / 0.0006 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012056 [exp] 396 / 5e-138 AT2G03500 164 / 2e-47 Homeodomain-like superfamily protein (.1) Lus10023857 [exp] 138 / 9e-38 AT2G03500 159 / 2e-44 Homeodomain-like superfamily protein (.1) Lus10020995 [exp] 138 / 1e-37 AT2G03500 173 / 1e-49 Homeodomain-like superfamily protein (.1) Lus10043304 [exp] 77 / 2e-15 AT2G03500 341 / 3e-113 Homeodomain-like superfamily protein (.1) Lus10019452 [exp] 69 / 1e-12 AT2G03500 231 / 3e-69 Homeodomain-like superfamily protein (.1) Lus10009334 [exp] 59 / 1e-09 AT4G37180 213 / 5e-67 Homeodomain-like superfamily protein (.1.2) Lus10019639 [exp] 54 / 4e-08 AT4G37180 206 / 4e-64 Homeodomain-like superfamily protein (.1.2) Lus10021699 [exp] 50 / 7e-07 AT1G25550 284 / 6e-94 myb-like transcription factor family protein (.1) Lus10035043 [exp] 49 / 2e-06 AT1G68670 281 / 7e-93 myb-like transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106600 [exp] 122 / 8e-32 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.004G144800 [exp] 121 / 2e-31 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.006G155200 [exp] 70 / 4e-13 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.007G039400 [exp] 65 / 1e-11 AT4G37180 216 / 2e-67 Homeodomain-like superfamily protein (.1.2) Potri.018G074200 [exp] 61 / 4e-10 AT2G03500 298 / 6e-97 Homeodomain-like superfamily protein (.1) Potri.005G134600 [exp] 55 / 2e-08 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.008G117500 [exp] 48 / 6e-06 AT1G68670 298 / 4e-99 myb-like transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027927 pacid=23157079 polypeptide=Lus10027927 locus=Lus10027927.g ID=Lus10027927.BGIv1.0 annot-version=v1.0 ATGGATTCGGTAGCTCCATCGGAGCTGAGCTTCGATTTCAGGACTGTATCGGCCAAGACGATGAGAAACATCCTCCTCCAGAACTCTTCCGCGCCGCCGG CGATCGGAGATTCTGCGGCGGCGACCAAAGTCGGCAGCTTGTTGAGTGAGCTGCAGGCCGAAGTGAAGAAGATCGACTCGATTCGGAACCAGCTTCCACT CTCCATGCTCCTTTTGACCGACGCTATTGCAGCGGTGAAGGAATGGATTGACAGCTCAGCTGGGAAGAAGCAAAAGCAAGTACCAGTTTTGGAGGAGTTC ATCCCGTTGAAGAAAAGCTGTGATGAAGAATGTAGAGTGAAAGAAGAGATTAAGGATTCATCTAAGGATAAGAGGAGTTGGATGAGCTCTGTCCAGTTAT GGAGCTCAGATGATTCTGTAGCTACAAAGCGAAACCACGGACTCGAATCTAAGGAGAACAAGAAAGGGAATGGATGTAGAAATGAGGATGCATTGTCAAG AAAACTGAAGATTGAGGAAAATGGTGGTAGAGATGAGGATTTGGGGGTTCCTGATCTCTCTTTACTAAGTCCGGGGATGAAGAATTTCGCGGAGGAATTC TTTGCTACTAGCTCGAGTCGAGGGGTTTCACAGTCTGATTCTCAGTCCGATGTTAGAGTAGTACCACACCACAACCAGCCACCTCTCCAAGGTTCTAGGA AGCAGAGGAGTTCTTTTGAAAACTTCTGCAGAACCACTTCCTTCAAGCCCAAGTCACAAAGATATGAACTTCAGAACAAATTTCTGCAGAACGTGCCTAT ATTTGACCAGGTCTCGAGAAAAACGACTACCTTGGTGGGGAATGGTGAGAAGATAAAGGCCCTTCTGGCAGATTGGAATGCCCTGAACCTGAAACTGAAA GTCATCTTATTCAGATTCCAAAAAGGTTTGGCCTTTTCTTTCAGGTTGCCATCTAGCTAA
AA sequence Show only first row Show all	>Lus10027927 pacid=23157079 polypeptide=Lus10027927 locus=Lus10027927.g ID=Lus10027927.BGIv1.0 annot-version=v1.0 MDSVAPSELSFDFRTVSAKTMRNILLQNSSAPPAIGDSAAATKVGSLLSELQAEVKKIDSIRNQLPLSMLLLTDAIAAVKEWIDSSAGKKQKQVPVLEEF IPLKKSCDEECRVKEEIKDSSKDKRSWMSSVQLWSSDDSVATKRNHGLESKENKKGNGCRNEDALSRKLKIEENGGRDEDLGVPDLSLLSPGMKNFAEEF FATSSSRGVSQSDSQSDVRVVPHHNQPPLQGSRKQRSSFENFCRTTSFKPKSQRYELQNKFLQNVPIFDQVSRKTTTLVGNGEKIKALLADWNALNLKLK VILFRFQKGLAFSFRLPSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10027927 [exp]	0	1
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10026274 [exp]	2.0	0.8202
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10000919 [exp]	6.3	0.8091
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Lus10040448 [exp]	6.6	0.8172
AT3G01750			Ankyrin repeat family protein ...		Lus10022330 [exp]	7.3	0.7935
AT1G26260	bHLH	CIB5, bHLH076	cryptochrome-interacting basic...		Lus10023562 [exp]	8.5	0.8100
					Lus10008292 [exp]	10.9	0.7844
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10028078 [exp]	11.3	0.7804
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10042398 [exp]	13.2	0.7981
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10025628 [exp]	13.8	0.7702
AT5G50020			DHHC-type zinc finger family p...		Lus10020844 [exp]	15.0	0.7166

Compare expression of checked genes

Lus10027927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.