Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20040 348 / 7e-114 ATIPT9 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3) AT2G15820 209 / 1e-57 OTP51 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) AT5G53550 92 / 4e-19 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G24380 91 / 7e-19 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT5G41000 84 / 1e-16 YSL4 YELLOW STRIPE like 4 (.1) AT3G27020 82 / 4e-16 YSL6 YELLOW STRIPE like 6 (.1) AT4G24120 81 / 1e-15 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT1G65730 80 / 3e-15 YSL7 YELLOW STRIPE like 7 (.1) AT3G17650 78 / 8e-15 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT1G48370 76 / 4e-14 YSL8 YELLOW STRIPE like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012051 [exp] 567 / 0 AT5G20040 505 / 1e-177 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3) Lus10012055 [exp] 395 / 3e-127 AT2G15820 795 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Lus10020996 [exp] 245 / 3e-71 AT2G15820 737 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Lus10023856 [exp] 155 / 4e-43 AT2G15820 197 / 3e-58 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Lus10008869 [exp] 89 / 4e-18 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10012549 [exp] 82 / 6e-16 AT3G27020 1154 / 0.0 YELLOW STRIPE like 6 (.1) Lus10041544 [exp] 82 / 6e-16 AT3G27020 1134 / 0.0 YELLOW STRIPE like 6 (.1) Lus10035194 [exp] 82 / 7e-16 AT3G27020 1147 / 0.0 YELLOW STRIPE like 6 (.1) Lus10000879 [exp] 81 / 2e-15 AT4G24120 1006 / 0.0 YELLOW STRIPE like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G376600 [exp] 414 / 1e-139 AT5G20040 568 / 0.0 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3) Potri.009G106800 [exp] 248 / 5e-72 AT2G15820 855 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Potri.001G327300 [exp] 83 / 2e-16 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.017G150500 [exp] 82 / 3e-16 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151800 [exp] 81 / 1e-15 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G082400 [exp] 80 / 3e-15 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.017G151600 [exp] 80 / 3e-15 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069200 [exp] 79 / 4e-15 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069300 [exp] 78 / 9e-15 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.005G093800 [exp] 77 / 1e-14 AT1G65730 896 / 0.0 YELLOW STRIPE like 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0324 [flax] [poplar] Homing_endonuc PF03161 [flax] [poplar] LAGLIDADG_2 LAGLIDADG DNA endonuclease family CL0023 [flax] [poplar] P-loop_NTPase PF01715 [flax] [poplar] IPPT IPP transferase CL0023 [flax] [poplar] PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10027928 pacid=23157000 polypeptide=Lus10027928 locus=Lus10027928.g ID=Lus10027928.BGIv1.0 annot-version=v1.0 ATGCAGGAAGTGCCACACCATTTGATTGACATATTGGAACCATATGAAGATTACTCAGTTGGACGGTTCTTTAGAGATTCTAGACAAGCCAGACAAGATA TTCTCAATCGTGGCAGTGTCTCTGTAGTTGTTGGTAGGACGGGACTGTACTTGAGATGGTTCATATATGGGAAACCTGATGTTCCACAAGCAACAGTGGA TGTTGCTTCTGAAGTTGACTCTGAGCTTGCTGAACTACAACGCAATAATGATTGGGACACGGCAGTACAATTAGTGGTCAAAGCAGGTGATCCAAGGGCA CAAGATTTACCAGTCAATAACTGGTACCGTTTGCGGTGCAGCCTTGAGATTATCAAGGCTAGTGGATTCCCTCCATTCAAGGAAGAAGCAATCTCAAACT CAACAGATAGCTCGTGCAGTGGTGGGAATGTAGACTCAAAAGATTTAGAGTACAAGTTTCTTTGCCTTTTCCTTTCAAGCCCCAGACTTGATTTATACAG ATCAATTGATTATCGATGTGAAGTGATGCTTTCAGAACGGTGTGGACTTCTATCGGAGGCAAAAATGCTCCTTGACATGGGTCTTCTTCCAAGTTCCAAT TCTGCAACTCGAGCAATTGTTTATAGGCAGGCAATGGAGTATCTCTTGAGGTGTAAGCATGAAGGAGGCAGTTCAACTGGAAATTTCCTTGCTTTTCTGG CTGATTTCCAGAAAGCATCTAGAAACTTTGCGAAAAGACAAACAACGTGGTTTCGCAATGAGCAAATTTATCACTGGCTTGATGCTTCTAAGCCTTTGGA GAAGGTGGTGGAATTTGTGTATGATGCATACCACGATCAATCCGAAACTCTGGTCGTGCCTGAATCGCTTAGAATGCCGAGATATGCCGACAGGCAAGAA CTTGCACAGCTCAAGGTGTACAGCGCTAAGAACAGGTGGGTTTGGGTCTTATCTGCTGGAGTTGAACGGGAAGACTTACGAACAAGCTGGTGGGGTGGAT TCGGAGGGGAACAGTCCGAGGAGTGTAAAGGAACCGAATGGATGACTGGTTTCTTGTTTGTCAGCACTTTTGTTGGGTTGCTTGCTTTGGTTCCTCTGAG GAAGATCATGATAATCGACTACAAACTGACTTATCCGAGTGGGACTGCTACTGCTGTTCTTATCAATGGCTTCCATTCCCCTAAAGGGAACAAGATGGCC AAGAAGAATGTCAAGAAACCGATGATCCTCAAGCTGACTGCAGAACAACGAGAAGCATTGGTCGGACTTTTACTCGGCGGATTGAAGATCGAATCCGACG ATCATAGAAAGAGCAGACATAGGATCATGTTCGAGCTCAACGAGAATTCCACGCAGCATTCGGTTCTGAGACACCACCTCTACGACGAGTACCACGAGTG GTTGCATCCTTCGTGCAGGCTAACCAACGATCTCGACGAGATACCATACAAGTTTGCCACGATCTCGCATCCGTATTTCGGATTCTACACCGACCAATTC CAGCCAGGTGGCAGGTTCGCTATACCGAAGCTGATACACCGGTGGCTATCGCCTCGAGCTCTAGCGTACTGGTACATGTACGGAGGGTGTAGAGTGATGC CGTCTGGGGATATAGTGTTGAAGCTTAAGGGTGATGATGAAGGTGTTGCTAGAGTTGTTAAAGCGCTGAGAGGGAAATCTCTCCAGTGTAGAGTGAAGAG GAAAGGTAGCAATTTTTGGATTGGGTTTGTTGGGGAAAGTTCTGAGTGGTTTTGGAAATTGGTTGAGCCTTATGTGCTGGGTGGGTTGCAAGAGTGTTTA CGAGCCGAGGGTTCGAGGGGTTCTACCGATGCTAAAGATGTTGATTTCGGTCGTGAGTCCGGTGATGATGAAGTTGGTGACGGAGATGGATTGGATCGTG TCCTCGGCTAG
AA sequence Show only first row Show all	>Lus10027928 pacid=23157000 polypeptide=Lus10027928 locus=Lus10027928.g ID=Lus10027928.BGIv1.0 annot-version=v1.0 MQEVPHHLIDILEPYEDYSVGRFFRDSRQARQDILNRGSVSVVVGRTGLYLRWFIYGKPDVPQATVDVASEVDSELAELQRNNDWDTAVQLVVKAGDPRA QDLPVNNWYRLRCSLEIIKASGFPPFKEEAISNSTDSSCSGGNVDSKDLEYKFLCLFLSSPRLDLYRSIDYRCEVMLSERCGLLSEAKMLLDMGLLPSSN SATRAIVYRQAMEYLLRCKHEGGSSTGNFLAFLADFQKASRNFAKRQTTWFRNEQIYHWLDASKPLEKVVEFVYDAYHDQSETLVVPESLRMPRYADRQE LAQLKVYSAKNRWVWVLSAGVEREDLRTSWWGGFGGEQSEECKGTEWMTGFLFVSTFVGLLALVPLRKIMIIDYKLTYPSGTATAVLINGFHSPKGNKMA KKNVKKPMILKLTAEQREALVGLLLGGLKIESDDHRKSRHRIMFELNENSTQHSVLRHHLYDEYHEWLHPSCRLTNDLDEIPYKFATISHPYFGFYTDQF QPGGRFAIPKLIHRWLSPRALAYWYMYGGCRVMPSGDIVLKLKGDDEGVARVVKALRGKSLQCRVKRKGSNFWIGFVGESSEWFWKLVEPYVLGGLQECL RAEGSRGSTDAKDVDFGRESGDDEVGDGDGLDRVLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	0	1
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	1.4	0.9207
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	2.6	0.9068
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	2.8	0.9188
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10037812 [exp]	3.5	0.9170
AT1G73020			unknown protein		Lus10009732 [exp]	3.9	0.9114
AT1G73350			unknown protein		Lus10042294 [exp]	4.9	0.9108
AT1G23890			NHL domain-containing protein ...		Lus10030639 [exp]	5.1	0.8991
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	5.7	0.9056
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10035357 [exp]	6.0	0.9039
AT1G01880			5'-3' exonuclease family prote...		Lus10036554 [exp]	6.9	0.8814

Compare expression of checked genes

Lus10027928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.