Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49510 220 / 2e-72 EMB1273 embryo defective 1273 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012054 [exp] 410 / 6e-147 AT1G49510 227 / 3e-74 embryo defective 1273 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G145600 [exp] 223 / 1e-73 AT1G49510 206 / 7e-67 embryo defective 1273 (.1) Potri.005G149500 [exp] 49 / 5e-07 AT1G49510 53 / 3e-08 embryo defective 1273 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027929 pacid=23157074 polypeptide=Lus10027929 locus=Lus10027929.g ID=Lus10027929.BGIv1.0 annot-version=v1.0 ATGGCTTCTATGTGGCAGGGATCATTTTTGTCATATCCCAAGCCATGCCATTGGGACTCGAGCATTAACTCGAAAGAAATCTTCGGGCGCTCAAGGCTGA ATGTCTGTTGTAGTATGAACATGGCTGCAGGGAAGTCAGAATATGACGATGAAAAGATAAGCTTTAAGCAACAACTAGTGAACAAAGCAAGAAAAGTTTG GGATAGTTGCCCCGAGCCAGTGAGGAGCTTCCCTTGGAACATAGCATTGTTCAACTTCATTCAACTTCAGGTTTATTTGATCCTCTCCGTCGTTAAGTAC TTGAGCGTGCCTTTACTGCTGATTACAACCATTAGTGAGATGTCGTATTGTGCGCACGAGAAGAAGTTGTTCCTTATCGTGTTTCCGCTGGTCGTTGGAT ACGTTCTTGCTGGATTATTCAGAGAAACTGCTCTCGAGATGTCTTCTCTCCTCAAGACGGCAGAAGTTCCATGGCATTTGTTCTTGGTTGCAACCATCTT CGTTCTGATCAAACTTCCAGGACCATATTATCCTTACTGGGGACGGTTGCTACTTCCACACTTAGCTAATGGAGTTCTTTGGAGGACTGTTTGGTATACC TTCCTGTGGTTTAGAAGACCTAGAGATGCATCTGGAGAATTGATATCCAACTGA
AA sequence Show only first row Show all	>Lus10027929 pacid=23157074 polypeptide=Lus10027929 locus=Lus10027929.g ID=Lus10027929.BGIv1.0 annot-version=v1.0 MASMWQGSFLSYPKPCHWDSSINSKEIFGRSRLNVCCSMNMAAGKSEYDDEKISFKQQLVNKARKVWDSCPEPVRSFPWNIALFNFIQLQVYLILSVVKY LSVPLLLITTISEMSYCAHEKKLFLIVFPLVVGYVLAGLFRETALEMSSLLKTAEVPWHLFLVATIFVLIKLPGPYYPYWGRLLLPHLANGVLWRTVWYT FLWFRRPRDASGELISN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49510		EMB1273	embryo defective 1273 (.1)		Lus10027929 [exp]	0	1
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10012156 [exp]	2.4	0.8489
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10023548 [exp]	4.7	0.8696
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10022022 [exp]	5.3	0.8469
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	5.5	0.8425
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10010321 [exp]	5.8	0.8583
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037908 [exp]	6.6	0.8219
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Lus10009860 [exp]	8.1	0.8198
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10008580 [exp]	9.5	0.8225
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	10.6	0.8324
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10028478 [exp]	14.0	0.8114

Compare expression of checked genes

Lus10027929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.