Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78110 196 / 1e-60 unknown protein AT1G22230 173 / 4e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012052 [exp] 436 / 1e-155 AT1G78110 207 / 3e-65 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G094700 [exp] 226 / 3e-72 AT1G78110 254 / 1e-82 unknown protein Potri.005G166400 [exp] 223 / 4e-71 AT1G78110 265 / 6e-87 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027930 pacid=23156952 polypeptide=Lus10027930 locus=Lus10027930.g ID=Lus10027930.BGIv1.0 annot-version=v1.0 ATGTCGACCCCTTCAGCAGACCTTCTGGTTTGTTTTCCTTCAAGAGTTCCCCACCATCTCACCTTAATGCCAAGTAAACCCATCTGCAGCCCCGCCAGAG GCGATCATCAACCCAACCACCGCCACCGCCGCCATCCCAGCGCCGGCGGCCTCTACCACCGGAGGATGAAGACGAAACAGATGATGAGTTCGGTGGACGT ATCCGAACCGACGTCTCCGAAAGTGACTTGTTCAGGGCAGATCAAGGTAAAGCACAAGAAATCAGGAGGTAAAGGAAGCTGGCAGTCTGTGATGGAAGAG ATTGAGAGGATTCATAAACAGGGGAAGTTAAAACAGAGGAGGAAGAAATCATCTTCATCGTCATCACCATGGACACAGTCTATTGGGTTCCTTGCTTGTC TTCGAAACATAAAACTTGATCTCAGGTGTTTTGGTGTTTTCCCACAGCCGGGGATGATCAATTCCGACGATGATGAAGCAGATGATGATGAAGAAGAAGA TGGTATTGATGAGGATGATGATCAAGAGGGAAGAACTGTGTTTTCGAAATGGTTCATGGTGTTGCAGGAAGAGAAGGAGGAGCTTGAAAACAATTGTACT ACTAGTACTACTACTTCTAATTGTGACCCTGTGATTCCTCCGGCGAATGCTCTGCTACTGATGCGGTGCAGGTCGGCTCCTCCGACGAAGAGTTTGAAGA CGTTGATGGAAGAAGAGAAGAAGACGGATAATAATAACAGATTAGTAGTGATGAGCTACGGCGATGAAGATGCTGATTTCTACAAGATCTCTTCGGACGT GGCCAAGGAAACGTGGGTCGTCGGAGGGATCAGAGACACTTTGTCAAGAAGCCGGAGCTGGAAGAGATGA
AA sequence Show only first row Show all	>Lus10027930 pacid=23156952 polypeptide=Lus10027930 locus=Lus10027930.g ID=Lus10027930.BGIv1.0 annot-version=v1.0 MSTPSADLLVCFPSRVPHHLTLMPSKPICSPARGDHQPNHRHRRHPSAGGLYHRRMKTKQMMSSVDVSEPTSPKVTCSGQIKVKHKKSGGKGSWQSVMEE IERIHKQGKLKQRRKKSSSSSSPWTQSIGFLACLRNIKLDLRCFGVFPQPGMINSDDDEADDDEEEDGIDEDDDQEGRTVFSKWFMVLQEEKEELENNCT TSTTTSNCDPVIPPANALLLMRCRSAPPTKSLKTLMEEEKKTDNNNRLVVMSYGDEDADFYKISSDVAKETWVVGGIRDTLSRSRSWKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78110			unknown protein		Lus10027930 [exp]	0	1
AT1G78110			unknown protein		Lus10012052 [exp]	1.0	0.7863
AT3G11110			RING/U-box superfamily protein...		Lus10040942 [exp]	4.5	0.7399
AT2G17550			unknown protein		Lus10016693 [exp]	8.1	0.7578
AT5G14390			alpha/beta-Hydrolases superfam...		Lus10022307 [exp]	8.5	0.6456
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10041571 [exp]	12.0	0.7219
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10020236 [exp]	21.0	0.6895
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030586 [exp]	22.9	0.7288
AT1G79760		DTA4	downstream target of AGL15-4 (...		Lus10038277 [exp]	25.3	0.6827
AT3G18060			transducin family protein / WD...		Lus10027252 [exp]	29.6	0.7116
AT3G54030			Protein kinase protein with te...		Lus10035550 [exp]	32.2	0.7030

Compare expression of checked genes

Lus10027930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.