Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19050 599 / 0 POK2 phragmoplast orienting kinesin 2 (.1) AT3G17360 265 / 5e-73 POK1 phragmoplast orienting kinesin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012048 [exp] 1287 / 0 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10017113 [exp] 291 / 6e-82 AT3G17360 1085 / 0.0 phragmoplast orienting kinesin 1 (.1) Lus10018341 [exp] 283 / 5e-79 AT3G19050 1074 / 0.0 phragmoplast orienting kinesin 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G145800 [exp] 724 / 0 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.010G153000 [exp] 342 / 3e-99 AT3G17360 639 / 0.0 phragmoplast orienting kinesin 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027933 pacid=23156918 polypeptide=Lus10027933 locus=Lus10027933.g ID=Lus10027933.BGIv1.0 annot-version=v1.0 ATGGGTATTATGTTAGAAACGGTGACAGGGCTGCATGCAGAAAATGGTTTGCTTCAACATGGGCTGTGTGAGACAAACTCAGTCATAGCGTATCTCAAGG AGCGTAATTCGAGGTCAGGTAGAGAGCTCGAAATATGCAGAAACCTCGAGGGAAAGTTATTGGCAGACATCAAGAGCAGTTTCGATCGTATATCAAGGAA AGAAGAAGAAACGGGTGGGCTTGGTGTTAAATTAAGTGCTTTCGAGAAAAGGATCTTTGATCTGCAGCATCAAGAGGAGTTGATGCTAGAGAGGTCAAAT CACATTGGATCTCAGCTCACTGTTCTGATAAAGGAGTTAGACTCCAGTAACCAAGATGTAATGGAGTCCCTTCTGACCCAGGAGAAAATGTTGAAAGACA GGGAACAATGCTTCGATTCCGAAACTGACATTCTTTTATTGGACATCTTGACTAAAGAATTCGTGTCGTGCATCATGGCTTCGCATTTAAAAGATGTCTT CAGTTTGGAAAAGCAGACGTTACAAGAAAAAGTTTCCTTCTTGGAGGCTAGTGTTGCCAGTTTGCAAGCTGATTTGGAGATAAAAAGTAATTCTCAGTCT GTTATTATGGCAGATTTGTCCTCAGAAAGGGAAAACATTCGAAGTTTTGTCAGCCAAGTGACTATGGTGAAGGATGAGAATGCTTTCTTGCAAAATGAAC TCGGGTCCTCCAAGGTAAGCTTCATCGAAGCGTTCAGCCGGTTAAGCTCGAGGAATTTGGAGTGTCTCGATGCAGTAGAAACAATACAATCTTCATTTCA CAGGTTCTGCAGTGCAGTGGATGAAGAAAATTCTACGCTTGAACATAAGGTCTTCAATGAGCTCTCAGAAAATTTAGAGAAGACATCCGTTTTCATTGAG GAGATTGATCGGTTGGAATGCTGTGTTGAAAACTTGGTATCTGAGAATATGTCTCTACAGGCAGATATGTCTAGGAGGGATGACATTCTGAAAGGAATGT CATTTGATCTTAGCCTATTACAGGAGTCTGCATCTAATACAAAAGATCTAAAAGATAAGATGGAGGCTCTGGAGAATGATCTTGCTGTCAAATCTGATCT GCTGGATGACGCCATTCTGAATAATCAAGCACTGGAAGCACAGTTACATGAAAAGACAGTCAGAGTGTCTGATCTTGAATCAGAACTAGCTAACAAAAGG GTATCTCTGAACACGTGCACTAGTGAAAATATCGAATTGAGAGCTCAAATCAAAGAAGCCTATTCTGCAAAGACATCACTTGAGGTGGAGCTAGCGAAGA GTAAGAGCTTGACAGAGAGTTTGGGGATGGAACTGTCTCAAATGTACAACGATCTTCACCAGATGGACACTAAAGTAGAAGCTTTGCAGAGCAGCTTGAG TGGAATTACGAATGAGAGGTATGAGCTATTGATAGAGATAGATGGTTTGAGACAACAGCTTGACAAAGCAGACACTTTGGCCGAGGAAAATGAAGCTATT GCAATGGCTGCTCAACAGGAGGCTGAATCCCTGAAAAAATACGCAGAGGACAAAGAGGCTGAGGTGGAACTACTAGAGAAGTCTGTTGAAGAGTTGGAAT GCACCATCAATGTCCTGGAAAACAATGTTGATAATCTAAAAGAAGAAACGGAAAGGCAAAGAATGCAAAGAGAAGACCTGGAAGTGGAAATTCATGCTCT AAAGCATCAAATGCAGACTTTTGAAAGTTCAGACTCAAACATGAGAAGGTATTTAGAAGAGAATGAGAAGTCCCTTGGAAATGCTCTACATCAAATTGAA ACTCTCAAAACAGATATAACCGACAAGGATACAGAGATTGTCCAATTCAAGGCACATATCTCCGAGCTGAATTTGCATGCGGAAGCACAAGCTAGTGAGT ACAAGCAGAAGTTTAAAGCTCTGGTAGCTATGGTTGAACAAGTGAAGCATGATGGTTCCTTCAACAATGCTGCTAATACTTCCGCAAACAAGTCAGAGAA ATTTGCTGTCAAGCCTAGGGGCTCCGGGTCTCCTTTCAAATGCATCGGTCTAGGTTTGGCTCAGCAGATGAAGTCCGAGAAGAATGAGGAAATGAGTGCT TCGAAGATACGTATTGAAGAGCTGGAATGTTTGGCAGCAAGCCGTCAAAAGGAGATATTTGCACTGCATTCCAGGTTAGCTGCTGCTGAGAGCATGACTC ATGATGTTATTCGAGATTTACTCGGACTGAAGCTTGACATGACAAATTATGCGTCAGTGCTGGACAATCAACAACTTAAGAAGATAGCAGAAAAAGCCCA GTTCAGCTGCTTGGAATCTAAAACACAGGACGACGACATAATCCAGCTCAAGATACAGCTCGATGAGTTTATAGAGGAAAGAAGAGGATGGCTCGAGGAA ATTGATCGTAAACAGTCTGAGATGGTCGCTGCACAGGTAGCGCTCGAAAATCTTCGTCAACAAGATCAATTCCTGCAAGCTGAAAATGAGATGTTAAAGA TCGAAAACGTGAGCCACAAGAAACAACTAACGGAACTTGAAGGCGAAGTAAAGAAGCTATCTGGACAGCAGAATCTCCAGCAAAGAATTCATCACCACGC GAAAATAAAGGACGAGAACCATGTCCTCAAGGTTCAGAACGAGGAACTCAGCTCCAAGCTTCACAGAGCAGAGCTGATGCTTTCTCGTGGAAGAGACGAG ATTGTACGCTATCGCACTTCCATTGAAAGGCTCTCTAGCTTGCCTCGTGATGAGAAGATCGAAGAGTTGAACTCGCTCCGGGAAAAATACGGTGACAGAA TGGCAACATCAGTAAGGACAAGAGCGGAAGAGAGTTACCAGACAAGTTCAAGAAAGCTGTCTAACCAACATCGCGATCATCTCAAGTTGGACCGGTGA
AA sequence Show only first row Show all	>Lus10027933 pacid=23156918 polypeptide=Lus10027933 locus=Lus10027933.g ID=Lus10027933.BGIv1.0 annot-version=v1.0 MGIMLETVTGLHAENGLLQHGLCETNSVIAYLKERNSRSGRELEICRNLEGKLLADIKSSFDRISRKEEETGGLGVKLSAFEKRIFDLQHQEELMLERSN HIGSQLTVLIKELDSSNQDVMESLLTQEKMLKDREQCFDSETDILLLDILTKEFVSCIMASHLKDVFSLEKQTLQEKVSFLEASVASLQADLEIKSNSQS VIMADLSSERENIRSFVSQVTMVKDENAFLQNELGSSKVSFIEAFSRLSSRNLECLDAVETIQSSFHRFCSAVDEENSTLEHKVFNELSENLEKTSVFIE EIDRLECCVENLVSENMSLQADMSRRDDILKGMSFDLSLLQESASNTKDLKDKMEALENDLAVKSDLLDDAILNNQALEAQLHEKTVRVSDLESELANKR VSLNTCTSENIELRAQIKEAYSAKTSLEVELAKSKSLTESLGMELSQMYNDLHQMDTKVEALQSSLSGITNERYELLIEIDGLRQQLDKADTLAEENEAI AMAAQQEAESLKKYAEDKEAEVELLEKSVEELECTINVLENNVDNLKEETERQRMQREDLEVEIHALKHQMQTFESSDSNMRRYLEENEKSLGNALHQIE TLKTDITDKDTEIVQFKAHISELNLHAEAQASEYKQKFKALVAMVEQVKHDGSFNNAANTSANKSEKFAVKPRGSGSPFKCIGLGLAQQMKSEKNEEMSA SKIRIEELECLAASRQKEIFALHSRLAAAESMTHDVIRDLLGLKLDMTNYASVLDNQQLKKIAEKAQFSCLESKTQDDDIIQLKIQLDEFIEERRGWLEE IDRKQSEMVAAQVALENLRQQDQFLQAENEMLKIENVSHKKQLTELEGEVKKLSGQQNLQQRIHHHAKIKDENHVLKVQNEELSSKLHRAELMLSRGRDE IVRYRTSIERLSSLPRDEKIEELNSLREKYGDRMATSVRTRAEESYQTSSRKLSNQHRDHLKLDR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027933 [exp]	0	1
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10007725 [exp]	1.7	0.9714
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Lus10036080 [exp]	2.0	0.9658
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10018661 [exp]	3.5	0.9710
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	7.9	0.9544
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	8.5	0.9661
AT2G37420			ATP binding microtubule motor ...		Lus10024429 [exp]	8.9	0.9620
AT5G48310			unknown protein		Lus10016071 [exp]	11.3	0.9539
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10018049 [exp]	12.5	0.9386
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10023401 [exp]	13.3	0.9506
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	14.5	0.9605

Compare expression of checked genes

Lus10027933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.