Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19050 1433 / 0 POK2 phragmoplast orienting kinesin 2 (.1) AT3G17360 731 / 0 POK1 phragmoplast orienting kinesin 1 (.1) AT3G44050 674 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G14150 405 / 3e-118 KINESIN-12A, PAKRP1 phragmoplast-associated kinesin-related protein 1 (.1) AT3G23670 390 / 2e-115 PAKRP1L ,KINESIN-12B phragmoplast-associated kinesin-related protein, putative (.1.2) AT3G20150 264 / 5e-72 Kinesin motor family protein (.1) AT2G28620 259 / 6e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G36200 259 / 9e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G47820 258 / 2e-70 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G45850 250 / 7e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012048 [exp] 3081 / 0 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10018341 [exp] 741 / 0 AT3G19050 1074 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10017113 [exp] 740 / 0 AT3G17360 1085 / 0.0 phragmoplast orienting kinesin 1 (.1) Lus10008438 [exp] 667 / 0 AT3G44050 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013377 [exp] 657 / 0 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021969 [exp] 362 / 3e-104 AT3G23670 689 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10016589 [exp] 301 / 1e-83 AT3G20150 914 / 0.0 Kinesin motor family protein (.1) Lus10041262 [exp] 276 / 2e-76 AT3G23670 559 / 8e-180 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10018120 [exp] 270 / 4e-74 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G145800 [exp] 1905 / 0 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.004G193700 [exp] 696 / 0 AT3G44050 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G156000 [exp] 683 / 0 AT3G44050 1231 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G149000 [exp] 387 / 4e-112 AT3G23670 1426 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.002G235500 [exp] 380 / 1e-109 AT3G23670 1399 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.001G360200 [exp] 291 / 2e-80 AT3G20150 804 / 0.0 Kinesin motor family protein (.1) Potri.002G123500 [exp] 251 / 4e-68 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 250 / 8e-68 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G024700 [exp] 250 / 9e-68 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 249 / 1e-67 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10027934 pacid=23156942 polypeptide=Lus10027934 locus=Lus10027934.g ID=Lus10027934.BGIv1.0 annot-version=v1.0 ATGGTCAGGATGTTGCGCGATCTCAAGTTTCCCCGCCGGAATTCGGGCAGGAACAACGAGGAGATCGAAAATGTCCCGGTGAACCCTAGGGATTCGATTT CGAGTCAAGCTAGCTCGGAATTGAGCTCTCGGACTCCGCTGAACACTATCCAAGAGCCCGTAGAGGTGACCGCGCCTCGAAACAAAGTAGAGAGGACTCC AACGAAACCTAAATCGAACCCCACTTTGCCTCCGCTTCGGACGCCGGAGAGAAACGGAGGTGTTGGGGGTGGAGTTCCTTCGTCGAAGCAACGGTTTGGG TGGGCTCATAGGAATGAGTTGAGCACGGTGGATGAGTCTAGGACTGATGCTAAGGACTTTATGACGAGAGGGGGCTTCCCTATTGCGACCCCAAGGTCTG TTAGGACAGTTGGAAGGCCTACCACCAGTTACTCAGAGTGCACTTCGGTGCAAAGTACGCCTACTAAGAGTGTCTCGAAGCCTCCCAGTTCGGCTTACAG GAGTAAGCTGGATGCTAGTAATGGAGTTGGACGTACGGGGAACTTTGGTGCTCTGTATAGAGGGGTCCCGGCTTCTGCTGGCTCGACTACTGCCATTGTT AATACAGCTGAAGTTCCACATTTTGATATGAAAGAGGATCCATCATTTTGGATGGATCATAATGTACAGGTTCTCGTACGAGTGCGACCTCTCAGTGGCA TGGAGAGGAGTGCGCAAGGCTATAATAGGTGTCTGAAGCAAGAGAGTGCTCAGACCATTACCTGGATCGGGCAACCAGAATCCAAGTTCACATTTGATCA TGTAGCTTGTGAAACAGTTGACCAGGAAATGCTTTTTAGGATGGCTGGTCTTCCAATGGTGGAGAATTGCTTGTCTGGCTACAATAGTTGTATCTTCGCC TATGGCCAGACAGGAAGTGGGAAGACACACACAATGCTTGGAGTCATTGATGGCTTAGAAGTAAAGCCCAGCATACAACGTGGAATGACACCAAGGATTT TTGAGTTCTTGTTTGCAAGGATTCAGGCAGAAGAGGAAAGTCGAAGGGATGAAAGGCTGCAATACAATTGCAAGTGCTCTTTCTTAGAGATTTACAACGA GCAGATTACTGATCTCCTTGATCCTTCATCTACCAATTTGTTGCTGAGGGAAGATTCCAAGAAAGGTGTCTACGTGGAGAATCTCTCAGAATTTGAAGTT CAGACTGTGAGCGACATTATAAAGCTTTTAGCTCAGGGATCTTTAAATAGGAAAGTGGCAGCAACAAATATGAACAGAGAGAGTAGCCGCTCTCACAGTG TGTTTACATGTGAGATTGAGAGCAAATGGGAAAAGGATTCCACAACTAACCTAAGGTTTGCACGGTTAAACCTGGTTGACCTGGCTGGTTCAGAAAGACA GAAAAGCTCAGGTGCTGAAGGTGAACGTTTAAAGGAAGCTGCAAGCATCAACAAATCATTATCAACTTTAGGCCATGTCATTATGATTCTAGTGGATGTG GCAAATGGAAAACCAAGGCATGTTCCTTACAGAGACTCGAGGTTGACCTTCCTTCTTCAGGACTCACTTGGTGGGAATTCGAAAACAATGATCATTGCTA ATGTCAGTCCCTCTGTGAGTTGTGCACCAGAGACACTCAACACTCTAAAGTTTGCTCAGCGAGCAAAACTTATCAAGAATAATGCTGTTGTGAATGAAGA TTCAACTGGGGATGTCATTGCGCTACAGCATAAGATACGTCTCTTAAAGGAGGAGATCTCGTTCCTCAAACGCCAGAATGTGTTCAGGTCTCTCTCATTT AGCTCTAGTCTCAATGATACAGAGGATGTACAAGATGATGCCTCCACAAGAAAACTGTCAATCGAACAACTGCCTACTGATGATTTAATTCAATTTGAGT CCAAAGGCACTGTTAGACTGTCCACGAAACAGTTGAAATCTCTGGAGTCAACTCTTGCTGGAGCTTTGAGACGAGAACAAATGGCAGAGACTGCTATCAA GAAACTTGAAGCAGAAGTTGCACAATTGAATCGTTTGGTTCGTCAAAGAGAGGAAGACACCAGGAGCACAAAAATGATGCTACGATTTCGGGAAGATAAA ATTCAGAGAATGGAGTCACTTCTTGGTGGCTCTCTACCTTCTGACAGTTATATAATGGAAGAGAGTAGAGCAATGCGTGAAGAGAATCAGTTGCTTCAAG CTAAAGTAGAGAAAAACCCCGAAGTAACTCGGTTTGCTTTAGAGAACATCAGGCTTCTGGAGCAGATCAGGAGGTTTCAAGAATTTTATGAGGAAGGGGA GAGAGAGATACTCCTGGATGAAATTTCTAAACTTCGGGAGCAGGTGCTCCAATTCTTTGATGGCACACCTATGTCTCACCAAAATTCAAATATGGATAAT CAGAATCAGGAAACCACACACGCCAACCAAGAGAACAATACTCTTCATTTAAAGTTAAAGAATACAGCCGATGAGTTGAAGCAGAGCAGGGAAAGCTACA ATGCTTGCATAGAGGAGAACCGAAAACTGAGTAGACAAATACACGATCTACATCAGATGTTGGAGAACTTCAAATCTACAGCCACTGTTGAGGATATTGG TGTTAGAAATAAAAAGGACTCAGTTGAAATGGAGCATTTTGCAGCAGGGGTAAATCAAGTAGAAGAAGTATTGAATCTGCAGCTGGAGTTGGACATAGTG AAGATAATTCTTGCAGAAGAAAGGTCATCCAAGGAAGAAGCAGTTGAAAATTCAAGTTCCTTAACGAGAGCTCTTGACTTGGCAAAAGAAAAGCTTTTGG TTTTGACCCAGCATTTTGATGATGTCACTGAAGAACTGAAAGAGACTAAGTTGGTAGTTGAAGCCCTTGAATCAGATCAAATACGAGCGATGACTGAAAT AGAAGAACTAAGTAAAAACAACAGTCATTATGTCAAGCTTCTGAGAGATAAGGAGACTGAAATCATGGCTTTGAAGCGCCGAAAGCCATCAAACGCCTTG CAGGCTAAGAATTCAGAGGATCAGGATTCTACCCTGATGAAGAAGCTGAAGAGGATGCAAGAGTCTATTGAGAAGACCAAGGAAATGAATTCCTGGTACT TCAGGGACAATGCTCGGCAGGCATCTAATGAAGCAGAAATGGAAGAAGTTCGACGACAGGCTGAAGCTGAAACTGTGGAGGCCATCATTTGTTTGGAGGA AGAACTTGGAGCGCTTCAGCACCAGGTCCAGGAATTCAATTTGAAAGAGATTGAAGCTAAAAGCTCTATAATGCTTCTGGAGGCCAAAGTGAAGGAGACT CACGACAAGTTGGACCTTGTAACTGAAGTGAATAATGAGTTGCTTGGAAAGCTTGAACAGAAAGAACAAGACATGAGAGAATTAACCCAAGAATGGGAGC TTCTGGCTTGTGAGATGGAAGCAATTCTCACTGATGGACATGAGGCTGTCATGGATGCTTCTGATCAGCTTGAAGAAATATCCACTACTTTACCCGAGAA GCGAATTTGGATCTCTGAACAAGTTAGCAGGTTAATTAGGACTGTATCTGAGAAGGAGTTACTGGTAGAAGAACTTGGAAAATGTTTAGAAGATGCAAAC CACCAGAGAACTGATGTGGAGTACATGATTAAGTCATTGCGGGGTGCAGCATTGGTGATTAATGAAGCGCATCAGCAGGAGTGCAATGAGAAAGAACAAG AAATTCTTGCCTTGAAGTCCCAATTGAAAGATCAAACCTTAAAAATTACAAAGCTGGACAACAAACTACATTTAGCAGAGTCTCATGCAAGTAATGCATT ACTTTGTGCTGCCATTGAATTTGTAATCATGAAGAGATTCTCAGAGATGAAGCACAATAGCCTCAATGAATTGAGTTACAAAGAAGTCGAACTTAGTAAA TTGGTTGAGATTAATGCGAGGCAAGAAAGCCTTCTCCATGATCAGGCTGCAACTATTGAAGGAGCTGAAGGAGAAATTCGATTGCTGAGATCAGAAACAG AAGAGTTAAAGAAAACATGCACCATTCTTCAGCAAGGCCTTAGTGAAGAGGAAAAACGATCATCTTCCATGCAGCTACAACTTGAAGCTATTGAAGAGAA CGAAATTTTGCAGACAAATGAAAAGCTTGTTGAGTTAAAAACTGAGGTGTTATCACTCCATTCATGCATATGTGCCAATATTCGAGATGATGCCTCTGAA ATTGATGGAACGCTGGAAGCTTGTGCACAAGATGTTCACAGCCTTGGATTGACAAATGCCATGAATGGCTTGAGCTCAGCTAACACTTCACATGAACAAA AAAATGAGATCAAATGCAGTCTAAACCATCCACGTAATAGAGATGTTACAGTTTCACTCCTAAAAGGAGAAATAGAGTCTGCGTTAGCAAGTTTGCAAGA TCTCCGGTCGGAGATGGGTAGGTTGCATGCAGAGAACGAAAAGTTCCGGATCTCAGAGAGTCAGAGCAAGGAGACTTTAGAGTTTGTTACTACTCAGTTA CTTGCAATGCAAGCTACTGTCAATGCCTTCGAGAAACAGTTTGAACTGAAGATAGACATTGTTAACCATAAGTTGCAGGCCTCTGAGCAAGTCGTCCAAA AAGCCATGTATGATTGGTCGGAAACAAAAGAGTGCGTTGAGATGGAAGTCGGTGATGCAAAGTTGATTGCTGTGCAGAAGGCTGCCGAAGCCTCTTGTTT ATTTGGAAAATTTGAGGAGGCGCAACATACAATGAAAGAAGCCGATATTATGATCAACAAACTCCTGATAGCTAATAAAACAATGAAGCTTGAGTTGGAA AAACAGAAGGAGATGGAGATCACACTAATAAATGAAAAAGAGAAGTTGAATGAAGAGGTCCAGAGCTTACAAGCTGCCAGCTGTGACAAGGATCAGCAGT TTGAAGATCTTGAAAGGCAGTTTGCCCAAAGCTTGAAGGAAACAACATGTGTTGTTCAAGGTCTTGTCTGA
AA sequence Show only first row Show all	>Lus10027934 pacid=23156942 polypeptide=Lus10027934 locus=Lus10027934.g ID=Lus10027934.BGIv1.0 annot-version=v1.0 MVRMLRDLKFPRRNSGRNNEEIENVPVNPRDSISSQASSELSSRTPLNTIQEPVEVTAPRNKVERTPTKPKSNPTLPPLRTPERNGGVGGGVPSSKQRFG WAHRNELSTVDESRTDAKDFMTRGGFPIATPRSVRTVGRPTTSYSECTSVQSTPTKSVSKPPSSAYRSKLDASNGVGRTGNFGALYRGVPASAGSTTAIV NTAEVPHFDMKEDPSFWMDHNVQVLVRVRPLSGMERSAQGYNRCLKQESAQTITWIGQPESKFTFDHVACETVDQEMLFRMAGLPMVENCLSGYNSCIFA YGQTGSGKTHTMLGVIDGLEVKPSIQRGMTPRIFEFLFARIQAEEESRRDERLQYNCKCSFLEIYNEQITDLLDPSSTNLLLREDSKKGVYVENLSEFEV QTVSDIIKLLAQGSLNRKVAATNMNRESSRSHSVFTCEIESKWEKDSTTNLRFARLNLVDLAGSERQKSSGAEGERLKEAASINKSLSTLGHVIMILVDV ANGKPRHVPYRDSRLTFLLQDSLGGNSKTMIIANVSPSVSCAPETLNTLKFAQRAKLIKNNAVVNEDSTGDVIALQHKIRLLKEEISFLKRQNVFRSLSF SSSLNDTEDVQDDASTRKLSIEQLPTDDLIQFESKGTVRLSTKQLKSLESTLAGALRREQMAETAIKKLEAEVAQLNRLVRQREEDTRSTKMMLRFREDK IQRMESLLGGSLPSDSYIMEESRAMREENQLLQAKVEKNPEVTRFALENIRLLEQIRRFQEFYEEGEREILLDEISKLREQVLQFFDGTPMSHQNSNMDN QNQETTHANQENNTLHLKLKNTADELKQSRESYNACIEENRKLSRQIHDLHQMLENFKSTATVEDIGVRNKKDSVEMEHFAAGVNQVEEVLNLQLELDIV KIILAEERSSKEEAVENSSSLTRALDLAKEKLLVLTQHFDDVTEELKETKLVVEALESDQIRAMTEIEELSKNNSHYVKLLRDKETEIMALKRRKPSNAL QAKNSEDQDSTLMKKLKRMQESIEKTKEMNSWYFRDNARQASNEAEMEEVRRQAEAETVEAIICLEEELGALQHQVQEFNLKEIEAKSSIMLLEAKVKET HDKLDLVTEVNNELLGKLEQKEQDMRELTQEWELLACEMEAILTDGHEAVMDASDQLEEISTTLPEKRIWISEQVSRLIRTVSEKELLVEELGKCLEDAN HQRTDVEYMIKSLRGAALVINEAHQQECNEKEQEILALKSQLKDQTLKITKLDNKLHLAESHASNALLCAAIEFVIMKRFSEMKHNSLNELSYKEVELSK LVEINARQESLLHDQAATIEGAEGEIRLLRSETEELKKTCTILQQGLSEEEKRSSSMQLQLEAIEENEILQTNEKLVELKTEVLSLHSCICANIRDDASE IDGTLEACAQDVHSLGLTNAMNGLSSANTSHEQKNEIKCSLNHPRNRDVTVSLLKGEIESALASLQDLRSEMGRLHAENEKFRISESQSKETLEFVTTQL LAMQATVNAFEKQFELKIDIVNHKLQASEQVVQKAMYDWSETKECVEMEVGDAKLIAVQKAAEASCLFGKFEEAQHTMKEADIMINKLLIANKTMKLELE KQKEMEITLINEKEKLNEEVQSLQAASCDKDQQFEDLERQFAQSLKETTCVVQGLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027934 [exp]	0	1
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10004531 [exp]	1.0	0.9705
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10012048 [exp]	3.7	0.9680
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10043473 [exp]	4.0	0.9527
AT3G27130			unknown protein		Lus10012529 [exp]	4.6	0.9439
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	4.9	0.9569
AT1G23790			Plant protein of unknown funct...		Lus10013007 [exp]	5.0	0.9570
AT3G57060			binding (.1.2)		Lus10027308 [exp]	5.2	0.9622
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10028113 [exp]	5.3	0.9527
AT1G76740			unknown protein		Lus10028114 [exp]	5.5	0.9516
AT5G64420			DNA polymerase V family (.1)		Lus10041274 [exp]	6.7	0.9469

Compare expression of checked genes

Lus10027934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.