Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19020 475 / 2e-155 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 461 / 5e-153 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 449 / 1e-148 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 441 / 7e-144 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 383 / 8e-126 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 382 / 4e-122 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 384 / 1e-121 Leucine-rich repeat (LRR) family protein (.1) AT1G12040 363 / 5e-115 LRX1 leucine-rich repeat/extensin 1 (.1) AT1G62440 363 / 5e-114 LRX2 leucine-rich repeat/extensin 2 (.1) AT4G28380 336 / 4e-109 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012047 [exp] 714 / 0 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 587 / 0 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 389 / 5e-125 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 360 / 5e-118 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 335 / 2e-106 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10037905 [exp] 326 / 3e-104 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 321 / 2e-103 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 308 / 6e-98 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 309 / 5e-96 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146350 [exp] 501 / 5e-167 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 491 / 1e-159 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 434 / 4e-144 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 394 / 1e-127 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 383 / 7e-125 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 380 / 2e-120 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G151000 [exp] 369 / 1e-119 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.007G139200 [exp] 363 / 3e-119 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 346 / 1e-110 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 317 / 5e-101 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027935 pacid=23156993 polypeptide=Lus10027935 locus=Lus10027935.g ID=Lus10027935.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCCTTTCTCAACTCCTTGGGCTGCCTTCTCCTTCTCTTCTTCTCTCTTTTCTCCTCCCCTTCATTCTCGGCCTTCTCTGATGCTTTGACGG ACGCTGAAGCCTCCTACATCGCCCGTCGCCAGCTCCTTACGTTGAACGAGCAGGGTAAAGAGCCGGCGGGGAGCGATGTGGATCCTAATTTGAAGTTTGA GAATCCGAGGTTGAAGAACGCCTATGTGGCCCTACAGGCGTGGAAGAAGGGAATCTACTCGGACCCAATGAACATGACCGGCACGTGGGTGGGGTCGGAC GTATGTTCCTACAAGGGAGTGTATTGTGCCCCCGCACTGGATGATTCGAAGCTGAACGTTGTTGCGGGGATCGATCTTAACCATGCTGACATTGCGGGGT ATTTCCCCTCTGAGTTGGGTTTGCTCACCGACCTTGCGTTGTTGCATCTGAACTCGAACCGATTTTGCGGGATCATCCCGAAGTCTTTTTGCAACATGAC GATAATGTACGAGTTTGATGTGAGCAACAACCGTCTCGTGGGGCCCTTCCCTCAGGTTGTGATGTGTTGGAAGGAGATCAAATTTGTTGACCTTAGGTTC AACAACTTTGAAGGGAGCTTGCCGCCGGAGGTCTTCACTAAGGGACTCGACGCCTTGTTCTTGAACAATAATCGGTTCACGTCGTCAATTCCTGACACGC TAGGGAACTCCACGGTCAGCGTTGTCACGTTGGCTTTCAACAACTTCACCGGTTGCATCCCTCACAGCATCGGGATGATGCCTAACGTACAGGAGATCAT CTTCGCCGGAAACAGCCTCGGAGGTTGCTTCCCACCGGAGATCGGAAACCTCAAGAATGTGACCGTGTTTGACGTGAGCGGTAGCGGCTTCGTGGGTCCC ATCCCATCGAGCTTTTCAGGGTTGAAGAGCGTTGAGATGTTGGATATTTCGAGCAACAAGATGACTGGATTAGTGCCTGAGGAGATCTGCAAGCTGCCGG CGTTGAAGAATTTCACGTTTGGTTCTAACTATTTCAACGGAGAGGGACCATCTTGTAACTCAAAGTCGAGGAGAGATGTGGTGTTCGATGATCATGATAA TTGTTTGTTGGATCGGCCGATGCAGAAGACTCCTAAAGTTTGCAATCCGGTGGTGATGAAACCAGTGGATTGTAGTAAGGATAGGTGCGGTGGTGGAGGT GGTGGTGGCGGTAGCAGTAAGGGTGATGGAGGAGAAGCTCCACCGAAGCCAAAGCCGACACCGTCGCCGGAGGAGGACCCACATTTGCCGGCGAGCGGTG GTATGAGCCGCCCTCCACCGCCACAATCGGCCCCGGTTCCATCTCCATCACCGGTCCAATCCTCGCCTCCACCAACGCCTGTTCCATCTCCATCGCCAGT TCGTGTGTCACCTGCGCCAACGCCTGTTCCATCTCCATCGCCGGTTCGTGTGTCGCCCCCACCGGCACCGGGTCATTCCCCGCCACCACCAGCACCGGTT CATTCACCTCCACCACCGGCACCGGTTCATTCCCCTCCACCACCAGCACCGGTGCACTCTCCGCCGCCACCTGTCCACTCTCCTCCTCCACCGGTGTTTT CCCCGCCTCCTCCGGTCCATTCCCCACCACCACCAGTTCACTCTCCTCCTCCTCCGGTCCATTCTCCACCACCGCCACCAACACCTCTCCCATCACCTCC ACCACCGGTTCACTCTCCTCCACCACCGGTTCACTCCCCTCCTCCTCCGGTTCACTCCCCTCCTCCTCCGGTTTTCTCTCCACCTCCACCAGTAGTCCAA AAGCCACCACCGAAGCCAGAGCCCTCCGTTCCTCCTCCATCCAAATCACCCCCACCGGAGTCAAAACCACCACAGCTTCCTCCACCAGTGAAATCATCAC CACCGGAGCCGGAACAACCCCTTCCTCCTCCATCAAAATCATCACCCCCACCGGAGGAGCCGGAACACTCTCTTCCTCCGCCATCCAAAACATCACCACC ATCACCACCGGAGCAAGAACGCCCTCTTCCTCCACCGGCGAAATCATCACCGCCGCCGATGCCAGACGTGGTCCTCCCGCCAAACCTTGGCTTCCAATAC TCGTCTCCTCCGCCGCCAATGTTCCCAGGCTACTAA
AA sequence Show only first row Show all	>Lus10027935 pacid=23156993 polypeptide=Lus10027935 locus=Lus10027935.g ID=Lus10027935.BGIv1.0 annot-version=v1.0 MAPPFLNSLGCLLLLFFSLFSSPSFSAFSDALTDAEASYIARRQLLTLNEQGKEPAGSDVDPNLKFENPRLKNAYVALQAWKKGIYSDPMNMTGTWVGSD VCSYKGVYCAPALDDSKLNVVAGIDLNHADIAGYFPSELGLLTDLALLHLNSNRFCGIIPKSFCNMTIMYEFDVSNNRLVGPFPQVVMCWKEIKFVDLRF NNFEGSLPPEVFTKGLDALFLNNNRFTSSIPDTLGNSTVSVVTLAFNNFTGCIPHSIGMMPNVQEIIFAGNSLGGCFPPEIGNLKNVTVFDVSGSGFVGP IPSSFSGLKSVEMLDISSNKMTGLVPEEICKLPALKNFTFGSNYFNGEGPSCNSKSRRDVVFDDHDNCLLDRPMQKTPKVCNPVVMKPVDCSKDRCGGGG GGGGSSKGDGGEAPPKPKPTPSPEEDPHLPASGGMSRPPPPQSAPVPSPSPVQSSPPPTPVPSPSPVRVSPAPTPVPSPSPVRVSPPPAPGHSPPPPAPV HSPPPPAPVHSPPPPAPVHSPPPPVHSPPPPVFSPPPPVHSPPPPVHSPPPPVHSPPPPPTPLPSPPPPVHSPPPPVHSPPPPVHSPPPPVFSPPPPVVQ KPPPKPEPSVPPPSKSPPPESKPPQLPPPVKSSPPEPEQPLPPPSKSSPPPEEPEHSLPPPSKTSPPSPPEQERPLPPPAKSSPPPMPDVVLPPNLGFQY SSPPPPMFPGY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	0	1
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	1.0	0.9926
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	1.7	0.9807
					Lus10015828 [exp]	4.5	0.9814
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	4.7	0.9605
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10006232 [exp]	5.1	0.9553
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	5.5	0.9639
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10020741 [exp]	5.8	0.9501
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	6.3	0.9802
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	6.5	0.9724
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	6.7	0.9795

Compare expression of checked genes

Lus10027935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.