Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61370 67 / 5e-14 Protein of unknown function (DUF3245) (.1) AT4G07940 44 / 1e-05 Protein of unknown function (DUF3245) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001364 [exp] 172 / 1e-54 AT3G61370 74 / 5e-18 Protein of unknown function (DUF3245) (.1) Lus10015467 [exp] 132 / 5e-35 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10012038 [exp] 102 / 4e-25 AT3G18990 67 / 5e-12 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027943 [exp] 83 / 4e-18 AT3G18960 76 / 9e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10012046 [exp] 0 / 1 AT3G18960 82 / 7e-18 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G069200 [exp] 99 / 3e-26 AT3G61370 84 / 9e-22 Protein of unknown function (DUF3245) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11595 [flax] [poplar] DUF3245 Protein of unknown function (DUF3245)
Representative CDS sequence Show only first row Show all	>Lus10027936 pacid=23156916 polypeptide=Lus10027936 locus=Lus10027936.g ID=Lus10027936.BGIv1.0 annot-version=v1.0 ATGAAAGATGGGGATCGGGTGAATCTCAAGGTTTCGGGTGGCGGCGGGTCGGGTGGAATTGACATTGTACTGGAGCATTCCGGACCATCGTTGACGATGA TGGGTAAAAAGTGGACTGGGTTCTACTATGCGAATCAGTTGAAGGAAGGGGCGTCTGCCTTTTCCAGGTTAACGAGCCCTCCTCCAGCAATGGAGGATTT GAGATACTGGTTTCATATCTCGAGTTTGATCGTGTTTGTTGAGGGGCTGAAACAAAACGGACGACCATCTATGTTATCTACCGCCTTCATAGAGCCTGAA ACCAATTCAGGACAGATGAGTTCAGAGGCGCCGCCCAAAACCAAGCCCTCACAAATTGTGACATCGAACCATGCCTTCAAGTTGGCTGAACAGTGGGTAA TGAAAATGAGCAGAAGCACGGATGATGAACCAGCAGACGCAGAAGAACAAGGTCGACCACTAAAGCTTGGACTCGGAGCCAGAGCAGCTCCACAATCCAA AATTACGCCTTCTAGTGATCCGGCAGCACGGAGACTGCACAACAAGTTGGAAGCTGGGAAGAAGAGAGCTGCCGGAGTTGGTAACGAGAGGGGCGATCCT GGAGGTGACAAAAGTGATGATGACAGCGATGGCGAATCGGAAAGCAGGACCTGTGCATTTGGCAAGAAGAGAGCTGGACCCCCAGCTGGTTTACCCTCTC AGTTGAACACCAAGAAGAAGCAGAAGAAGAACATTCATAAGTAA
AA sequence Show only first row Show all	>Lus10027936 pacid=23156916 polypeptide=Lus10027936 locus=Lus10027936.g ID=Lus10027936.BGIv1.0 annot-version=v1.0 MKDGDRVNLKVSGGGGSGGIDIVLEHSGPSLTMMGKKWTGFYYANQLKEGASAFSRLTSPPPAMEDLRYWFHISSLIVFVEGLKQNGRPSMLSTAFIEPE TNSGQMSSEAPPKTKPSQIVTSNHAFKLAEQWVMKMSRSTDDEPADAEEQGRPLKLGLGARAAPQSKITPSSDPAARRLHNKLEAGKKRAAGVGNERGDP GGDKSDDDSDGESESRTCAFGKKRAGPPAGLPSQLNTKKKQKKNIHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61370			Protein of unknown function (D...		Lus10027936 [exp]	0	1
AT1G08110			lactoylglutathione lyase famil...		Lus10021429 [exp]	5.6	0.8450
AT3G05675			BTB/POZ domain-containing prot...		Lus10021269 [exp]	13.7	0.7901
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10042895 [exp]	19.4	0.8385
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10040543 [exp]	24.4	0.8247
AT1G15860			Domain of unknown function (DU...		Lus10026216 [exp]	24.8	0.8337
AT4G27040		VPS22	EAP30/Vps36 family protein (.1...		Lus10002292 [exp]	25.0	0.7910
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	27.0	0.8276
AT5G19670			Exostosin family protein (.1)		Lus10043239 [exp]	31.3	0.8156
AT5G62980		FOLB2	Dihydroneopterin aldolase (.1)		Lus10021252 [exp]	35.1	0.7978
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000948 [exp]	37.7	0.8248

Compare expression of checked genes

Lus10027936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.