Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 62 / 9e-11 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT3G18960 49 / 1e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 45 / 2e-05 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012039 [exp] 387 / 7e-137 AT3G18990 74 / 4e-15 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027942 [exp] 346 / 1e-120 AT3G18990 69 / 3e-13 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012045 [exp] 259 / 2e-87 ND 44 / 2e-05 Lus10035637 [exp] 70 / 3e-13 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014528 [exp] 68 / 9e-13 AT3G18990 95 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 66 / 3e-12 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 65 / 6e-12 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 62 / 4e-11 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10017970 [exp] 61 / 1e-10 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 48 / 5e-06 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 47 / 9e-06 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 45 / 2e-05 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.014G057101 [exp] 44 / 5e-05 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027937 pacid=23157071 polypeptide=Lus10027937 locus=Lus10027937.g ID=Lus10027937.BGIv1.0 annot-version=v1.0 ATGTCTGCAGCCAACAAATTCCCATTGCCTGAAACCATTCAGGACAAGGAAATGATGCTTCCTCGGAGGTTTATGAAGAATTTCAAGGCCGAGTTCTCTG GTTCCGAGCTGACAATGGAGGTTGCTGATGGAAGAATTTGGACAGTTGGATTGGAGGAAGAGGAAGGATATCCTAACCGAGTCTGGCTCGTCCCAGGATT CGAGAGGTTCTACTCCATCTCTCCGAAACAGATCCTCCTCTTCAGGTACCTCGAGCCATCCCGTCTCAAGGTCTTCATCTTGCGCTCAACGTCAATGGAG ATAACTTATCCACTACTAGCCCCGACCCCCGACTCCTCCGAACTGTTGGACCGCCTTAAGAAGATGAAGAAGATGCAACTGAGCAACAAGTTCAACTTGG TATTCGACAAGATGTCTACGAACAGCAAGAGGGCGATCGAGAGAGCTTTGGAGGAGAGGAATCCGGCCAACATTGCTACACTGGTTGTCATAACGAGTTA TCACATATCCCCTGGATTGTTGCGTCTGCCAACAAAGTTTTCGAACAAATTTTGCTTGGCAGATCCAGATCGTTTGGTGCGTACTTGGTGGGCTGTGTTC AACAAGGTTGTTGGGGAGAATCAGAGGCAGATGAGTGGATGGGCCCAGTTTCGTACAACCAACAAGATAGTCGAGGGAGACGTTTGTGTGTTCGAGTTGA TTCCTCCGTCAATAAAGATTGTGTCAAACTCGAGTAATATAGTCGAGTTAATGTTTGAACTTGATCGCTTGTCATCTAATCAAACCAGAAGTTGTGCAGG CTCGTAA
AA sequence Show only first row Show all	>Lus10027937 pacid=23157071 polypeptide=Lus10027937 locus=Lus10027937.g ID=Lus10027937.BGIv1.0 annot-version=v1.0 MSAANKFPLPETIQDKEMMLPRRFMKNFKAEFSGSELTMEVADGRIWTVGLEEEEGYPNRVWLVPGFERFYSISPKQILLFRYLEPSRLKVFILRSTSME ITYPLLAPTPDSSELLDRLKKMKKMQLSNKFNLVFDKMSTNSKRAIERALEERNPANIATLVVITSYHISPGLLRLPTKFSNKFCLADPDRLVRTWWAVF NKVVGENQRQMSGWAQFRTTNKIVEGDVCVFELIPPSIKIVSNSSNIVELMFELDRLSSNQTRSCAGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027937 [exp]	0	1
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10031448 [exp]	3.0	0.8345
AT3G61700			Plant protein 1589 of unknown ...		Lus10039340 [exp]	5.2	0.7724
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10003624 [exp]	8.8	0.7878
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10039214 [exp]	12.2	0.8299
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012018 [exp]	14.7	0.7878
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10015060 [exp]	15.9	0.7666
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019871 [exp]	18.4	0.7898
AT2G31980		AtCYS2	PHYTOCYSTATIN 2 (.1)		Lus10041257 [exp]	23.1	0.7640
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	24.7	0.8039
					Lus10012394 [exp]	25.5	0.7527

Compare expression of checked genes

Lus10027937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.