Plant FIBer expression Database

Lus10027938 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G15890 160 / 2e-49 MEE14 maternal effect embryo arrest 14 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012044
[exp]
358 / 1e-127 AT2G15890 157 / 2e-48 maternal effect embryo arrest 14 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G108200
[exp]
181 / 5e-58 AT2G15890 194 / 5e-63 maternal effect embryo arrest 14 (.1.2)
PFAM info
Representative CDS sequence
>Lus10027938 pacid=23157094 polypeptide=Lus10027938 locus=Lus10027938.g ID=Lus10027938.BGIv1.0 annot-version=v1.0
ATGGCGACGAAATCAGCCCTCCTTCCTCCTCCCCTTTCTCTTCCCCGACCCAAATCGGATTTTATCCCCTTAAGAAAGACCATTTCCTCTTCTTTCGCCA
TTAGAGCTTCCAGAGGAAATGTCCCCAAGCTGGAGCCCTTCAGCCGGAGCAAGATGGATCGGGCTCTCCCCGACCCGCCCCTCATCGAAAAGTCGCTCAA
CCAGATCGCCGATTACTGCTCGAATCTGGAAGGAGACGATGCTTCCAGCGGCTGGCAAGCCTATTTCGAGCTCAGGGACCTCCAAGCCAGGGTTCCGGAG
CGGGAAGTGGAGATGCTAATACACCAGGCCGGCGGGGTGAAAACCTTGATCTCATACCTACACAGCATGACACCAATGTTTAGCAACTACAAAAGAGACA
ACAGTACGGACAACAATGGGGGAGGTTCTTTCTCCTCTGCTCTTCAGCAAGGAAGCTTGAAGAGGATGAAGGAGGAATGTCCCATCCCCGATGGGCTGCC
GAGGCCGCAGGAGGAGATCGACGAGGAAGAGGAGGCTAGAATGCCTGATACTCCGCATACCAGGTTGCTCAGAGCTAGGAGCAGGTTTCCCGCTTGGTAC
ACTCCCCGGCCTGACCATGAGACTGATTGA
AA sequence
>Lus10027938 pacid=23157094 polypeptide=Lus10027938 locus=Lus10027938.g ID=Lus10027938.BGIv1.0 annot-version=v1.0
MATKSALLPPPLSLPRPKSDFIPLRKTISSSFAIRASRGNVPKLEPFSRSKMDRALPDPPLIEKSLNQIADYCSNLEGDDASSGWQAYFELRDLQARVPE
REVEMLIHQAGGVKTLISYLHSMTPMFSNYKRDNSTDNNGGGSFSSALQQGSLKRMKEECPIPDGLPRPQEEIDEEEEARMPDTPHTRLLRARSRFPAWY
TPRPDHETD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G15890 MEE14 maternal effect embryo arrest ... Lus10027938
[exp]
0 1
AT3G04590 AT-hook AT hook motif DNA-binding fami... Lus10006573
[exp]
2.4 0.8042
Lus10003592
[exp]
3.2 0.7982
AT1G13260 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING ... Lus10041487
[exp]
6.0 0.7491
AT1G61820 BGLU46 beta glucosidase 46 (.1.3) Lus10018353
[exp]
14.3 0.7546
AT4G32295 unknown protein Lus10001504
[exp]
15.7 0.7535
AT5G53050 alpha/beta-Hydrolases superfam... Lus10005918
[exp]
17.3 0.7441
AT4G21760 BGLU47 beta-glucosidase 47 (.1) Lus10000225
[exp]
18.2 0.7857
AT3G25570 Adenosylmethionine decarboxyla... Lus10034412
[exp]
19.3 0.7484
AT1G20780 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-B... Lus10030224
[exp]
22.4 0.7146
AT4G36020 CSDP1 cold shock domain protein 1 (.... Lus10001724
[exp]
23.0 0.7225

Lus10027938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.