Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15900 958 / 0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) AT1G15240 318 / 6e-93 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023847 [exp] 868 / 0 AT2G15900 606 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012042 [exp] 783 / 0 AT2G15900 495 / 9e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012043 [exp] 639 / 0 AT2G15900 404 / 1e-133 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10035877 [exp] 233 / 6e-63 AT1G15240 1026 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10025785 [exp] 217 / 7e-58 AT1G15240 953 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10036765 [exp] 161 / 2e-45 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108300 [exp] 1170 / 0 AT2G15900 1117 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.004G146600 [exp] 1145 / 0 AT2G15900 1073 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.003G053200 [exp] 250 / 1e-68 AT1G15240 986 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Potri.001G183100 [exp] 248 / 5e-68 AT1G15240 512 / 1e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02194 [flax] [poplar] PXA PXA domain PF00787 [flax] [poplar] PX PX domain PF08628 [flax] [poplar] Nexin_C Sorting nexin C terminal
Representative CDS sequence Show only first row Show all	>Lus10027939 pacid=23156987 polypeptide=Lus10027939 locus=Lus10027939.g ID=Lus10027939.BGIv1.0 annot-version=v1.0 ATGGAGACAATTGAAGATCTGATCGAGGAAGCTAAGGTTCGGACGGTGTGGTGGGCGTTGTGCATCTTCACCATTACTTACTTCTTATCTCATACGAGTT CGTCGATGTGGATTAACCTTCCAATATCAATCCTCATTGTTGCTGGATTGCGGATACTGTCTAACGAAGTGGAGTTTTACTGGAAGCCACGCAACTTAGT CCGGCCACAGTCGTATCTGTCTCATTTGGAAAAGAAGCAATTATCCGTGAACGATTCTCGGCTTTCTTCTGCACCTCCACCACCGAGATGGAGGAGGAAG ATTGATTCACCTGTGGTGGAAGCTTCAGTCAATGACTTTATTGATAAGATAATGAAGGACTTTGTGGTTGATCTCTGGTACTCTGAAATTACGCCTGACA AGGATGCCCCGGAGTTGATACGCGGAGTGATAATGGATGCTCTTGGTGAGATATCGGGGAGAGTTAAAGAGATTAACGTTGTTGATTTGCTTACAAGAGA TATACTTGATTTAATAGGAGATCACTTGGATCTCTTTAGACGGAATCAAGCAGCAGTTTGTGTTGATGTAATGAGAACTCTCTCAACTGAGGAGCGAGAT GAAAGGCTCAAACATCATCTAATGGAATCAAACGAGCTCCATCCAGCTTTGATATCTCCAGAGAGTGAGTATAAGGTTCTTCAGCGGATAATGTCTGGCG TTTTAGCAGTAGTGTTAAGACCACGAGAAGCTCAATCCCCCTTGGTGCGGACTATTGCCAGAGAGATTGTTACTTGCTTGGTAATGCAACCAGTTTTGAA TCTTGCAAGCCCCGTGTATATCAATGAGGTGATTGAATTAATCTTGCTTGCCGTTATAGATAACAACCCAATGAACACAGGAAATGATCAGGCCAGTGGG TTTGCAAACAGTGGAGCACCTGTCTCCCAGAAATGCTCTACACTGGATCCTGCTAGTGCCATAACTCCAACTAAGTCTAGAACTCATGAAGACACCTCAA TGGATGATGGTGTAGATCACCCAGACTCTCCACGCCATGCCGTTTGGGGGAAGATGCTAGAGGCTGCAACACAGAGAAGAACTGAAGTTCTCACACCTGA AAATTTAGAGAATATGTGGACGAAAGGCAGAAATTATAAGAAAAAAGAGAATAAGATTACTAAAGCAGGTAGCACGCAGGCTAATCCGAAGGGTTCTTTA GTGACAAATGCTGAATTCTCTTCGTATATGGGGAAAGAAATGGCAGCTTCCAGCACTGTGGTTCCAACGAGAACAGATGGAAAAGTTGCTGGCCACCTAA TGCCTCAATTAAGGCCTGATAATTCTGTAGTCATTGAAAAGAGAAATGAAGAACATTTTATAGCAGGTCAGAGTAGCGAGTATTCTCTTGGTGATGATAT CGCCGATGGATTCAAGACTTCCAAACCTCTTACGAATGAAAGTGGGGGTAAGCTGAAGCGGTCAAATAGCACTTCTGCTCTGAAAGACCAGCCTGAAAAG AAGATGGCATTAGAAGGAGAACATGGAGGTTCTGTTATTTCAGAGTACAACAGTGAAGATTTTCTTGGGCATGCTTCGGATCCTGCTGTTAAGATCATTC CTGATATAGTGTTACACAGTGATGCGACTAATGTTCCAAAGCTCAGGTCCAGGGTCATGGGAGCATACTTTGAAAAGCTTGGGTCAAAGTCCTTTGCAGT TTATTCGATAGCAGTAACGGATGCGGATCAGAGAACTTGGTTTGTAAAGAGAAGATATAGTAATTTTGAGAGGTTGCACAGACAGCTTAAAGAGATACCA AACTATACATTGCATTTGCCTCCAAAAAGAATCTTCTCTTCAAGCACAGAGGATGCTTTCGTCCATCAACGCTGTATTCAGCTTGATAAATATCTCCAGG ATCTATTGTCTATAGCTAATGTGGCTGAGCAGCATGAAGTTTGGGATTTTTTAAGTGCTTCCTCCAAGTCATTCCTATTTCCTCACTTGATTGCCTTTGG AAAAACAGTCAATATGGACGATGCCGTGGACGACATTATGCGTCAATTTAAAGGCGTTTCTGGTGGCTGGGGACGTAAAGGCGGCAGTTCAGCTTCTCAA TTTGATGAAAGCAGTTCACCAAGATACAACAGGAATTCACCTTGGAATGTAGATGACTCGAGTAAGGTTGTATGTAGGCAAAATACCATGGGTACTGAAA ATAGCTCTTCCGACAATGATGATACTCAACAGCAAGAAAACCATGACCAAGAGGATGTCAGACCTGGTGCACAAGCTAGTGGGTGGCATTCAGATAATGA AGTGGACTCAAGTACTTCCCCTGGTCGACTAGTCAAACAGGATGAGATGTACAGGAGCTTAAATTTAAAGCAAAATGATGATTCTGTCATGAAATCTGAT GGTGGTAATGAAGGTCAGCCCTCAGCAGTTAATTCGGCCTTAATCTCTTCTCGTGTCGAGGATCCAGTTGGCATGCCACCTGAGTGGACGCCACCTAACG TTAGTGTGCCCCTGTTGAACCTAGTTGACAAGGTGTTTCAGCTCAAGAGAAGAGGCTGGCTGAGGCGTGAATTGTCGTTCCAGGAGACAGGTATTTTGGA TATCGAAGCAGATAGTACAGTTGATGATGGAAGATGCCATCGACGACTGGCTCTTGGGACAGATCTATTGGCTTCGGAGAGAGGAGACTATAGCTTTAGG AATCCGATGGGTGCAAGATGTAAGTCATCGTTTCTCTGGCCGAATGGAATTTTCTTTACAAAAATCGGGGTTCCTCATTGCAAAGCCAAAGAACCTCAAC AAAACCTTAATTCATTTCAGCTGGAACAGTTTGGTGGTAGCAAGGAGCCTAAGCAGAGCACGTTCGAGGAACAGCTCGAAGCTTCTCGCAGAGCAAATTA CATCAGGAAAACACTCTTCGATGGAGTTCCAACAGCCTTAGTGAGTTTGATCGGGGCTAAGCAATACAGGCGATGCGCAAGAGATATCTATTACTTCACT CAGTCTACCATCTGCATAAAGCAACTTGCATTCGCGATCCTCGAACTATTACTAGTGACTGTGTTCCCCGAGCTTCGAGACCTCCTGCGCGAGCTTCACG AGAAGATGCCTGTACAAAACCCCGCATAG
AA sequence Show only first row Show all	>Lus10027939 pacid=23156987 polypeptide=Lus10027939 locus=Lus10027939.g ID=Lus10027939.BGIv1.0 annot-version=v1.0 METIEDLIEEAKVRTVWWALCIFTITYFLSHTSSSMWINLPISILIVAGLRILSNEVEFYWKPRNLVRPQSYLSHLEKKQLSVNDSRLSSAPPPPRWRRK IDSPVVEASVNDFIDKIMKDFVVDLWYSEITPDKDAPELIRGVIMDALGEISGRVKEINVVDLLTRDILDLIGDHLDLFRRNQAAVCVDVMRTLSTEERD ERLKHHLMESNELHPALISPESEYKVLQRIMSGVLAVVLRPREAQSPLVRTIAREIVTCLVMQPVLNLASPVYINEVIELILLAVIDNNPMNTGNDQASG FANSGAPVSQKCSTLDPASAITPTKSRTHEDTSMDDGVDHPDSPRHAVWGKMLEAATQRRTEVLTPENLENMWTKGRNYKKKENKITKAGSTQANPKGSL VTNAEFSSYMGKEMAASSTVVPTRTDGKVAGHLMPQLRPDNSVVIEKRNEEHFIAGQSSEYSLGDDIADGFKTSKPLTNESGGKLKRSNSTSALKDQPEK KMALEGEHGGSVISEYNSEDFLGHASDPAVKIIPDIVLHSDATNVPKLRSRVMGAYFEKLGSKSFAVYSIAVTDADQRTWFVKRRYSNFERLHRQLKEIP NYTLHLPPKRIFSSSTEDAFVHQRCIQLDKYLQDLLSIANVAEQHEVWDFLSASSKSFLFPHLIAFGKTVNMDDAVDDIMRQFKGVSGGWGRKGGSSASQ FDESSSPRYNRNSPWNVDDSSKVVCRQNTMGTENSSSDNDDTQQQENHDQEDVRPGAQASGWHSDNEVDSSTSPGRLVKQDEMYRSLNLKQNDDSVMKSD GGNEGQPSAVNSALISSRVEDPVGMPPEWTPPNVSVPLLNLVDKVFQLKRRGWLRRELSFQETGILDIEADSTVDDGRCHRRLALGTDLLASERGDYSFR NPMGARCKSSFLWPNGIFFTKIGVPHCKAKEPQQNLNSFQLEQFGGSKEPKQSTFEEQLEASRRANYIRKTLFDGVPTALVSLIGAKQYRRCARDIYYFT QSTICIKQLAFAILELLLVTVFPELRDLLRELHEKMPVQNPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	0	1
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033817 [exp]	2.2	0.8565
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	3.5	0.8471
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	4.6	0.8527
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	4.9	0.8552
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	5.9	0.8364
AT5G65290			LMBR1-like membrane protein (....		Lus10035927 [exp]	6.2	0.7647
AT5G23490			unknown protein		Lus10004286 [exp]	8.8	0.7897
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	9.8	0.8030
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	10.6	0.8162
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000272 [exp]	10.7	0.8186

Compare expression of checked genes

Lus10027939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.