Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 353 / 3e-121 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49480 234 / 6e-76 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G01580 69 / 2e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 67 / 8e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 66 / 2e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 62 / 2e-10 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 49 / 2e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G35310 44 / 0.0001 B3 Transcriptional factor B3 family protein (.1) AT3G17010 44 / 0.0001 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G18000 42 / 0.0003 B3 VDD VERDANDI (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012041 [exp] 668 / 0 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 253 / 9e-84 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10021006 [exp] 167 / 2e-51 AT1G49480 138 / 5e-42 related to vernalization1 1 (.1) Lus10016777 [exp] 91 / 6e-20 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002934 [exp] 85 / 6e-18 AT3G18990 112 / 5e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032871 [exp] 84 / 2e-17 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 83 / 2e-17 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 82 / 4e-17 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 71 / 1e-13 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146900 [exp] 397 / 1e-137 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 389 / 1e-134 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 246 / 2e-78 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 158 / 8e-45 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 137 / 5e-36 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 116 / 5e-29 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.002G129800 [exp] 67 / 4e-12 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 65 / 2e-11 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 61 / 1e-10 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 62 / 2e-10 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10027940 pacid=23156941 polypeptide=Lus10027940 locus=Lus10027940.g ID=Lus10027940.BGIv1.0 annot-version=v1.0 ATGGGACCTAACCTAACATTTAGCTGCATGCAGAGGATCCCAGATAATTTTATCAAGAAATTTGCAAATGACCTCACCCATCTTGTGAGACTGACTGTCC CTGATGGTCATGTGTGGCGCATAGGAATAGTAAAAGCTGACGACAAGTTTTGGTTTCATGATGGGTGGAATGACTTTGTCGAGAGTTACTCGATTCGTGT TGGCTACTTGCTGGGTTTCAGATACGAAGGAAATGCAATCTTCAATGTTCATATGCTCTATTTTTCTGCCTCTGAGATGTACTTTCTAACTAACACTCTC AGTGGGAAAAGATGCCTTCTTTTTGATGATCTGGACGACGAGGACTCCACTGAATACTTGAACTCCGTACCCGTTTACCAAGTTCCTTACGCAATGAAAG CTAACAATGCACATTTGTCGAGAGTCAACAACGTTCCGCAGCCAGCAAGTCAACCAGTTGTGGAACCGAATCTTCAGTTCAATGCATTTGATCATCAGCA TAATGCTTCTTCGGATGCTGCACCACCAGCTAAGGTTCCGAAGAAACGCGGAAGAAAAAGGAAGAAACCTGATCCTAATGCAGACGAGGAGCAAGCCTCA GCTGCAAGGCCCCAAGAGGATGGAGAAATGAAATTTAGATTCTATGAAAGCGCATCTGCGAGAAAACGAACAGTGACTGCTGAAGAGAGGGAAAGAGCTA TAAGTGCCGCTAAAACATTCGAGCCCGAAAATCCTTTCTGCCGGGTCGTGTTGCGACCGTCTTATTTGTACAGGGGCTGCATCATGTATTTACCATCCAG CTTCGCAGAGAAGAATCTAAACGGTGTTTCGGGGTTCATCAAGCTCCAGTTCACCGACGGGAAACAGTGGCCCGTTCGGTGTCTCTACAAGGGAGGTAGA GCGAAACTAAGCCAAGGATGGTATGAGTTCACGTTGGAGAACAACATCGGGGAAGGAGATGTGTGTGTTTTCGAGATGCTCAAGTCAAGGGACGTTGTTC TGAAAGTGACCGTGTTCCGAGTCATGGACAGTTCTGCAGGCTACATGAACCTTAACCATCATCGGATGCCTGTTCCTCCTCCGCCCGCTGCAGCTGCTGG TCGACACTAG
AA sequence Show only first row Show all	>Lus10027940 pacid=23156941 polypeptide=Lus10027940 locus=Lus10027940.g ID=Lus10027940.BGIv1.0 annot-version=v1.0 MGPNLTFSCMQRIPDNFIKKFANDLTHLVRLTVPDGHVWRIGIVKADDKFWFHDGWNDFVESYSIRVGYLLGFRYEGNAIFNVHMLYFSASEMYFLTNTL SGKRCLLFDDLDDEDSTEYLNSVPVYQVPYAMKANNAHLSRVNNVPQPASQPVVEPNLQFNAFDHQHNASSDAAPPAKVPKKRGRKRKKPDPNADEEQAS AARPQEDGEMKFRFYESASARKRTVTAEERERAISAAKTFEPENPFCRVVLRPSYLYRGCIMYLPSSFAEKNLNGVSGFIKLQFTDGKQWPVRCLYKGGR AKLSQGWYEFTLENNIGEGDVCVFEMLKSRDVVLKVTVFRVMDSSAGYMNLNHHRMPVPPPPAAAAGRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027940 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012041 [exp]	1.0	0.9489
AT3G06390			Uncharacterised protein family...		Lus10012808 [exp]	1.4	0.9477
AT4G12840			Protein of unknown function (D...		Lus10041107 [exp]	1.7	0.9470
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10007463 [exp]	3.9	0.8971
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10020610 [exp]	5.1	0.9011
AT5G13500			unknown protein		Lus10009691 [exp]	6.0	0.9267
					Lus10022087 [exp]	10.4	0.9121
AT3G21530			DNAse I-like superfamily prote...		Lus10034003 [exp]	21.7	0.9140
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10036274 [exp]	24.1	0.9248
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10019247 [exp]	24.8	0.8642

Compare expression of checked genes

Lus10027940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.