Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 69 / 2e-13 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G33280 59 / 5e-10 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 56 / 4e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 56 / 5e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 47 / 3e-06 B3 REM19, RTV1 related to vernalization1 1 (.1) AT1G49475 43 / 9e-05 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012039 [exp] 382 / 6e-135 AT3G18990 74 / 4e-15 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027937 [exp] 352 / 7e-123 AT3G18990 62 / 9e-11 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012045 [exp] 283 / 2e-96 ND 44 / 2e-05 Lus10010759 [exp] 105 / 2e-26 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 105 / 3e-26 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 101 / 5e-24 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 85 / 4e-19 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 81 / 1e-17 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023079 [exp] 79 / 2e-17 AT3G18990 69 / 3e-13 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 74 / 8e-15 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 63 / 5e-11 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 61 / 3e-10 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.014G057101 [exp] 56 / 6e-09 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 54 / 2e-08 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 50 / 9e-07 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 49 / 1e-06 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 48 / 4e-06 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035500 [exp] 41 / 0.0005 AT5G66980 102 / 4e-25 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 41 / 0.0006 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10027942 pacid=23156919 polypeptide=Lus10027942 locus=Lus10027942.g ID=Lus10027942.BGIv1.0 annot-version=v1.0 ATGTCTGCAGCCAACAAATTCCCATTCCTGCAATTCTTCAAGGTGATCTTGCCTGAAACCATTCATCACAAGGAAATGATGCTTCCTCGGAGGTTTATGA AGAATTTCAAGGCCGAATTCTCTGGTTCCGAGCTGACATTGGAAGTTGCTGATGGAAAAACTTGGACAGTTGGATTGGAGGAAGAGGAAGGACATCTTAA CCGAGTCTGGCTCGTCTCAGGATTCGAAGATTTCCTCAGGTTCTACTCCATCTCTCCGAAACAGATCCTCCTCTTCAGGTACCTCAAGCCGTCCCGTCTC AAGGTCTTCATCTTGCACTCAACATCAATGGAGATAACTTATCCACCACTAGCCCCAGCCCCCGATTCCGACGAACTGTTGGACCGGCTTAAGAAGATGA AGAAGATGCAACTGAGCAACAAGTTCAACTTAGCATTCGAGACGATGTCTACGAACAGCAAGAGGGCGGTCGAGAGAGCTCTGGAGGAGATGAATCCGGC CAACATTTCTACACTGGTTGTCATAGCGAGTTATCACATACGCCCAGGAAACATGTATCTTCCAGTGAACTTCACTAAGAAGTTGTGCTCGAGGGATGAT TCAACTACGGCAAGGCTGAAGCTCTATGAGGGGACGGATCAGGTGGTGGGCGAGTGGCCGATTGAATTCAACAAACTTCGAAGTCAGAGGAATCAGAAAA ATGTCACAGGATGGAACAAGTTTCGCCGGGAAAACGAGTTGGTCGAGGGAGACGTTTGTCTTTTCGAGCTGATTCCTCGTTCCGAGGGGGAGATCTTACT ACTCAAAGTTCGTATCGTCAGGGCTGCTGCTGAGTGA
AA sequence Show only first row Show all	>Lus10027942 pacid=23156919 polypeptide=Lus10027942 locus=Lus10027942.g ID=Lus10027942.BGIv1.0 annot-version=v1.0 MSAANKFPFLQFFKVILPETIHHKEMMLPRRFMKNFKAEFSGSELTLEVADGKTWTVGLEEEEGHLNRVWLVSGFEDFLRFYSISPKQILLFRYLKPSRL KVFILHSTSMEITYPPLAPAPDSDELLDRLKKMKKMQLSNKFNLAFETMSTNSKRAVERALEEMNPANISTLVVIASYHIRPGNMYLPVNFTKKLCSRDD STTARLKLYEGTDQVVGEWPIEFNKLRSQRNQKNVTGWNKFRRENELVEGDVCLFELIPRSEGEILLLKVRIVRAAAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027942 [exp]	0	1
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10034319 [exp]	4.7	0.8707
AT1G25450		KCS5, CER60	ECERIFERUM 60, 3-ketoacyl-CoA ...		Lus10041452 [exp]	6.2	0.8688
AT5G47180			Plant VAMP (vesicle-associated...		Lus10011004 [exp]	6.9	0.8505
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	7.7	0.8668
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10027725 [exp]	11.0	0.8158
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	11.7	0.8354
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10016365 [exp]	11.8	0.7920
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023626 [exp]	12.4	0.8469
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	15.2	0.8313
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10002688 [exp]	15.9	0.8061

Compare expression of checked genes

Lus10027942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.