Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18960 73 / 1e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 72 / 1e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 70 / 6e-13 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 65 / 4e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 56 / 3e-08 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G06220 44 / 4e-05 B3 REM21 AP2/B3-like transcriptional factor family protein (.1) AT3G06160 44 / 0.0002 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT1G16640 42 / 0.0002 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31640 43 / 0.0003 B3 REM5 transcriptional factor B3 family protein (.1) AT5G66980 43 / 0.0003 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012046 [exp] 659 / 0 AT3G18960 82 / 7e-18 AP2/B3-like transcriptional factor family protein (.1) Lus10012038 [exp] 466 / 2e-164 AT3G18990 67 / 5e-12 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012040 [exp] 224 / 2e-71 AT4G01710 92 / 2e-23 CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1) Lus10035637 [exp] 130 / 1e-32 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 114 / 2e-28 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025669 [exp] 109 / 3e-26 AT3G18990 100 / 1e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 102 / 4e-24 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002425 [exp] 99 / 4e-24 AT4G01580 85 / 1e-20 AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 91 / 2e-20 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G147200 [exp] 94 / 5e-21 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.010G191500 [exp] 87 / 1e-18 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 69 / 1e-12 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 69 / 2e-12 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 60 / 1e-09 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 56 / 1e-08 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 55 / 4e-08 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 53 / 6e-08 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 53 / 2e-07 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 52 / 4e-07 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10027943 pacid=23157061 polypeptide=Lus10027943 locus=Lus10027943.g ID=Lus10027943.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCCAAGCATGGAGGAGCTTCTTCTTCATCATCATCCCCTCTGGTTTCCTCTCCACATCAGAGTTTCATGAGAGTCATCCTTCCACATGTCC TCCAAGCCAAGAAGATGGTGCTGCCGCTGAAATTCGTGGGTTTGTACGGCTCAGAGCTCTCGTCGACGGCGGAGCTGTTTCTGCCGAACGGCGCCATTTG GACTGTAGGCGTGGAGAAAGGAAGAAATGCTAGTAGTGGCGGGAACGAGGCCCGTTTTGGAAAGAACTGGGCTGAGTTCGTGGGCCGACACTCCATTTCC ACCGGATTCTTCCTCCGATTCGACTACCTTCGGGATTCCAAGTTCAATGTCAAGACCTACGACACCAGCTGTTGTGGAATCACATACCGTTTTCCTTCTC CGTCGGCCGCTGCCGCCGCCGGCGAAGTAGAAGATAGGAGCGTTGAGAACTTCTTCCGACTCATCATGCCAAGTGTCATCGAAGAGAAACAACTCCCCCT GGCGATCAAGTTCGCGAGGAAGCACGGGAGGAAGCTGGCGATGAAGAAGTGGTCAAACGCACAGCTCTGCCTTCCAAACGGCACCGTATTCGAAGCCGGC ATAACGGCTGGAAAAGACCGTAAGGAACTCTGGTTCAAAAGAGGGTGGTCCAAGTTCATGGATGACAACTCCATCAAGCAGGATTTCTTCCTCACTTTCG AGTACGCTGGCGACTCCAGGTTCAATGTCGGCGTATTCGATCCTTCCACATGCGAGATCCTTTACCCACCACCACCACCACCTGCTGTCGTCGACGAGAC TGAATGCGATGCTTTGCTGTCTGATTTGGAGGCGAGTGGAATCGAAGTGGCCAGCAAATTCAACTGCCTGACATTTCCCAAAATGTCTTCGGAAAGCAAG ACCGCTATGCGAGAAGCTATGGCCAACAAGCGGGTCGACGTTCCATCGTTCATCGTCGTGATGATGCCCGCCGCTCAACAACACAGAACGACCTACCGCA TTACTGTTCCAACTGGAATTGTGCAAAAGCTGCAGATGAAATATGGGGATCGGGTGAATCTCAAGGTTTCGGGTGGCGGCGGGTCGGGTGGTTTTGAAAT TGTACTGAAGCATTCCGGACCATCGTTGACGATGGTGGGTAAAAAATGGACTGGGTTCTACTATGCGAATCAGTTGAAGGAAGGGGACGTCTGCCTTTTC CAGGTTATCAAGCCCTCCTCCAGCAATGGATTTGAGATCCTGGTTGCCATATTTCGAGTTTGA
AA sequence Show only first row Show all	>Lus10027943 pacid=23157061 polypeptide=Lus10027943 locus=Lus10027943.g ID=Lus10027943.BGIv1.0 annot-version=v1.0 MAAAKHGGASSSSSSPLVSSPHQSFMRVILPHVLQAKKMVLPLKFVGLYGSELSSTAELFLPNGAIWTVGVEKGRNASSGGNEARFGKNWAEFVGRHSIS TGFFLRFDYLRDSKFNVKTYDTSCCGITYRFPSPSAAAAAGEVEDRSVENFFRLIMPSVIEEKQLPLAIKFARKHGRKLAMKKWSNAQLCLPNGTVFEAG ITAGKDRKELWFKRGWSKFMDDNSIKQDFFLTFEYAGDSRFNVGVFDPSTCEILYPPPPPPAVVDETECDALLSDLEASGIEVASKFNCLTFPKMSSESK TAMREAMANKRVDVPSFIVVMMPAAQQHRTTYRITVPTGIVQKLQMKYGDRVNLKVSGGGGSGGFEIVLKHSGPSLTMVGKKWTGFYYANQLKEGDVCLF QVIKPSSSNGFEILVAIFRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10027943 [exp]	0	1
AT4G33800			unknown protein		Lus10006135 [exp]	5.7	0.9826
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10029719 [exp]	6.3	0.9848
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10024533 [exp]	9.1	0.9843
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10017870 [exp]	9.4	0.9681
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10015952 [exp]	11.1	0.9843
					Lus10003757 [exp]	11.7	0.8942
					Lus10038594 [exp]	12.8	0.9843
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Lus10040467 [exp]	14.3	0.9843
					Lus10011636 [exp]	15.7	0.9843
					Lus10029057 [exp]	16.1	0.9018

Compare expression of checked genes

Lus10027943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.