Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18950 439 / 6e-152 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 429 / 8e-148 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 398 / 2e-135 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 389 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 373 / 5e-126 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 354 / 2e-120 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 216 / 6e-66 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 211 / 1e-63 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 197 / 6e-59 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 195 / 9e-58 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012036 [exp] 659 / 0 AT3G18950 463 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 415 / 8e-143 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 404 / 2e-138 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023836 [exp] 397 / 2e-134 AT3G18950 431 / 3e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 393 / 3e-134 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 390 / 6e-133 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 376 / 1e-127 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016779 [exp] 289 / 4e-92 AT3G50390 435 / 2e-148 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011699 [exp] 208 / 4e-62 AT3G50390 256 / 5e-80 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109500 [exp] 474 / 1e-165 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 470 / 3e-164 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 395 / 1e-134 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 397 / 3e-134 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 392 / 2e-133 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 389 / 5e-132 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 223 / 2e-67 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 211 / 8e-64 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 205 / 2e-61 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 204 / 2e-61 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10027944 pacid=23157088 polypeptide=Lus10027944 locus=Lus10027944.g ID=Lus10027944.BGIv1.0 annot-version=v1.0 ATGAGGTACGAAAAGTCACAAGATCCGCCGGCTCCTAATCGCCGGCTCAAGCTCGGTGCACTCCTGCTCCACGAAGACGCTGAGCTTAATCATGACATCG CGACCGCTTCCTCAAGCTTGACTAGCACCCCGAGGGACTCGAACAGTAGCGGCACTCCAGCCCCCGCCGACCTGCTATTCGCTTCTTCTCCTTTCTACGG CGGCGGACTGCTATCTCCCTGGAACAACAGCAGCAACAACAATCCGACGCTATCGCCGTACTTGAAATCCCCCTGGATAATCCCTTCCCCTGCTCTTCTT CCAAACAACAGCTTAATCGGATCGATTGTGCGGCAGGAAGGCCACGTCTACTCTCTGGCCGCGTCTGGAGATCTTCTCTACACCGGATCTGACAGCAAGA ACATCCGAGTGTGGAAGGACTTGAAGGAGTTCGCCGGATTTAAGTCGAACAGCGGACTCGTGAAGGCGATTGTAGTCCACGGCGATAAGGTTTTCACCGG TCACCAGGACGGGAAAATCCGGATCTGGAAGGTCTCGTCGAGGAACTCGTCTACCTACGGAAGGATAGGGAGCTTGCCGACGTTCAAGGATTCGCTTACG AGCTCCGTCAATCCGAAGAACTACGTCCAGATTCGGCGACGGAAGAACGTTTTGAAAATCAAGCATTACGATGCTGTTTCTTGTATGGCGCTGAATCCAG ATCTCGGCCTTCTCTACTCCGGCTCCTGGGACAAAACTCTCAAGGTATGGCGAATCGGAGACGGTAGGCGCAACGGTAGCAGTGCTTCTAATTACAAGTG TTTGGAATCGATAAACGCGCACGACGACGCGATAAACGCGGTGGCGACGGGATTCGATTCTCTGGTTTTCACCGGATCCGCGGACGGGACTGTGAAGGTG TGGAAGCGGGAGCTGGAATCGAAAGGAAACGTCAAGCATTTCTTAGTCCAGACGCTGCTGGAGCAGGAGAGCGCGGTGACGGCGTTGGCAGTGAGCAGCA GCGGAGGAGGCGATGTCGGATCGGAAGTGGTGTACTGCGGGTCGTCGGACGGGATGGTGAACTTCTGGGAGAGGGAGAAGCACCTCTCGCACGGCGGAGC GCTCCGGGGACACAAGATGGCGGTGCTCTGCCTGGCCACGGCGGGGGAAGGGTTGGTTTTCAGTGGGTCCGCCGATAAAAGCATCTGCGTGTGGAGGAAG GAGAGAGGTGGTGGGGACCACGTCTGCCTTAGGCCTTACTGTGTTGAGGGGCCACTAGGGGCCCGTCAAGTGCTTGGCGGTGGGGAGATCGGACGGTGA
AA sequence Show only first row Show all	>Lus10027944 pacid=23157088 polypeptide=Lus10027944 locus=Lus10027944.g ID=Lus10027944.BGIv1.0 annot-version=v1.0 MRYEKSQDPPAPNRRLKLGALLLHEDAELNHDIATASSSLTSTPRDSNSSGTPAPADLLFASSPFYGGGLLSPWNNSSNNNPTLSPYLKSPWIIPSPALL PNNSLIGSIVRQEGHVYSLAASGDLLYTGSDSKNIRVWKDLKEFAGFKSNSGLVKAIVVHGDKVFTGHQDGKIRIWKVSSRNSSTYGRIGSLPTFKDSLT SSVNPKNYVQIRRRKNVLKIKHYDAVSCMALNPDLGLLYSGSWDKTLKVWRIGDGRRNGSSASNYKCLESINAHDDAINAVATGFDSLVFTGSADGTVKV WKRELESKGNVKHFLVQTLLEQESAVTALAVSSSGGGDVGSEVVYCGSSDGMVNFWEREKHLSHGGALRGHKMAVLCLATAGEGLVFSGSADKSICVWRK ERGGGDHVCLRPYCVEGPLGARQVLGGGEIGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18950			Transducin/WD40 repeat-like su...		Lus10027944 [exp]	0	1
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	8.4	0.7826
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10008129 [exp]	14.4	0.7810
AT1G34300			lectin protein kinase family p...		Lus10013252 [exp]	14.8	0.7690
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10033535 [exp]	20.0	0.7525
AT1G29290			unknown protein		Lus10029256 [exp]	21.2	0.7507
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007317 [exp]	23.7	0.7444
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015998 [exp]	25.9	0.7351
AT2G33580			Protein kinase superfamily pro...		Lus10008586 [exp]	29.3	0.7565
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10028452 [exp]	45.3	0.7055
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10043017 [exp]	45.8	0.6855

Compare expression of checked genes

Lus10027944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.