Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37220 228 / 2e-76 Cold acclimation protein WCOR413 family (.1) AT3G50830 223 / 2e-74 ATCOR413-PM2, COR413-PM2 cold-regulated 413-plasma membrane 2 (.1) AT2G15970 212 / 2e-70 ATCYP19, FL3-5A3, ATCOR413-PM1, WCOR413-LIKE, COR413-PM1 CYCLOPHILLIN 19, ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1, cold regulated 413 plasma membrane 1 (.1.2) AT2G23680 127 / 6e-37 Cold acclimation protein WCOR413 family (.1.2) AT1G29390 64 / 1e-12 COR413IM2, COR314-TM2 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) AT1G29395 59 / 1e-10 COR413IM1, COR413-TM1, COR414-TM1 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012035 [exp] 368 / 9e-132 AT4G37220 242 / 6e-82 Cold acclimation protein WCOR413 family (.1) Lus10027946 [exp] 346 / 4e-123 AT3G50830 247 / 5e-84 cold-regulated 413-plasma membrane 2 (.1) Lus10012034 [exp] 343 / 6e-122 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Lus10021020 [exp] 272 / 7e-94 AT4G37220 258 / 3e-88 Cold acclimation protein WCOR413 family (.1) Lus10016782 [exp] 204 / 7e-67 AT3G50830 277 / 9e-96 cold-regulated 413-plasma membrane 2 (.1) Lus10023833 [exp] 179 / 1e-57 AT3G50830 175 / 3e-56 cold-regulated 413-plasma membrane 2 (.1) Lus10025378 [exp] 56 / 3e-09 AT1G29390 225 / 2e-74 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10015258 [exp] 55 / 4e-09 AT1G29390 223 / 1e-73 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10004599 [exp] 52 / 3e-08 AT1G29395 201 / 9e-65 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109800 [exp] 261 / 2e-89 AT3G50830 238 / 4e-80 cold-regulated 413-plasma membrane 2 (.1) Potri.004G149100 [exp] 241 / 9e-82 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Potri.007G033801 [exp] 226 / 8e-76 AT3G50830 282 / 1e-97 cold-regulated 413-plasma membrane 2 (.1) Potri.007G032000 [exp] 66 / 1e-13 AT4G37220 72 / 7e-16 Cold acclimation protein WCOR413 family (.1) Potri.001G353500 [exp] 43 / 5e-05 AT1G29395 185 / 1e-58 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05562 [flax] [poplar] WCOR413 Cold acclimation protein WCOR413
Representative CDS sequence Show only first row Show all	>Lus10027945 pacid=23157016 polypeptide=Lus10027945 locus=Lus10027945.g ID=Lus10027945.BGIv1.0 annot-version=v1.0 ATGGCGAAACAGAGCTACTTAGCGATGAAGATCGACGGAGCAAGCAGCGCACTGATTGCTTCAGATTTCAACGAACTAGCCGCCGCAGCGAAGAACTTGG CAATCCACGTCGGAGCCGTCGCCGGATTCGGAACCTCCCTGTTCCAGTGGCTCGCTGCAATCTCCGCCATATATCTACTGATACTGGATCGGACGAATTG GAAGACTAACATTCTCACAGGGTTACTCATCCCTTACATCTTCTTCACCTTGCCTCATTTCCTCTTCAGTTTCCTCCGAGGGGAGATCGGGAAATGGGCT GCGCTCGTCGCTATTGTGGTTCGCCTGTTCTTCCCCAGCCAATTCGCAGAATGGCTAGAGATGCCGGCTTCGTCGATCCTACTAATAGTGGTGGCACCAG AGTTGATCGCCGGCTACGCGAGAGGGAACTGGATCGGAGTAGCGATATGCCTTGGGATTGCCTGCTACTTGCTCCAGGAACACATCAGAGCCTCCGGCGG GTTTAAGAACGCCTTCACCAAAGAAGCAGGAATCTCCAACACCATTGGAATTTGTCTCCTCTTTGTTTACCCTGCCTACTCTCTCATCAGAAGTATCCTC TGA
AA sequence Show only first row Show all	>Lus10027945 pacid=23157016 polypeptide=Lus10027945 locus=Lus10027945.g ID=Lus10027945.BGIv1.0 annot-version=v1.0 MAKQSYLAMKIDGASSALIASDFNELAAAAKNLAIHVGAVAGFGTSLFQWLAAISAIYLLILDRTNWKTNILTGLLIPYIFFTLPHFLFSFLRGEIGKWA ALVAIVVRLFFPSQFAEWLEMPASSILLIVVAPELIAGYARGNWIGVAICLGIACYLLQEHIRASGGFKNAFTKEAGISNTIGICLLFVYPAYSLIRSIL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37220			Cold acclimation protein WCOR4...		Lus10027945 [exp]	0	1
AT4G37220			Cold acclimation protein WCOR4...		Lus10012035 [exp]	1.0	0.9087
AT3G52740			unknown protein		Lus10022717 [exp]	1.4	0.8953
AT1G78060			Glycosyl hydrolase family prot...		Lus10022374 [exp]	4.2	0.8678
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	5.5	0.8628
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10033523 [exp]	7.7	0.8016
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	8.0	0.8645
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10024966 [exp]	8.0	0.8483
					Lus10010603 [exp]	9.0	0.8380
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10019285 [exp]	12.4	0.8347
					Lus10026434 [exp]	15.2	0.8529

Compare expression of checked genes

Lus10027945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.