Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47960 82 / 3e-19 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1) AT3G17140 52 / 7e-09 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G64620 39 / 0.0008 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000822 [exp] 219 / 1e-73 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016318 [exp] 118 / 8e-34 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016317 [exp] 109 / 3e-30 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017013 [exp] 103 / 5e-28 AT1G47960 112 / 4e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017076 [exp] 101 / 4e-27 AT1G47960 88 / 9e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10037792 [exp] 99 / 3e-26 AT1G47960 91 / 1e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017040 [exp] 94 / 4e-24 AT1G47960 92 / 3e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10002738 [exp] 84 / 3e-20 AT1G47960 67 / 5e-14 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10003530 [exp] 59 / 5e-11 AT1G47960 91 / 5e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063000 [exp] 100 / 2e-26 AT1G47960 137 / 3e-41 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.009G083500 [exp] 84 / 2e-20 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.008G102600 [exp] 68 / 2e-14 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.016G001600 [exp] 47 / 1e-06 AT5G64620 82 / 9e-20 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.006G134900 [exp] 42 / 5e-05 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.001G288500 [exp] 39 / 0.0002 AT1G47960 59 / 1e-11 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.007G108301 [exp] 39 / 0.0005 AT5G64620 163 / 1e-51 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10027947 pacid=23181196 polypeptide=Lus10027947 locus=Lus10027947.g ID=Lus10027947.BGIv1.0 annot-version=v1.0 ATGGCGCCACACCCAACACAACTCACCGGCGCTCTGACCTCCGCCGCCCTCTTTCTCCTCATCATAACAACCACCACCACCCATGCCTCCTCCTCCGTCG TAGCCGCCGCCAGCAATCTCATCACACAAACATGCAAGCAAACCCCAGACTACAACCTCTGCGTATCCTCCCTCACCGCCGACACCCGCGGCCCGAAAGC AAATGACGTCCAGACCCTCGCCCTCATAATGATAGACGTAGTCAGCAACAAGGCCGCCGCAACTTCCGAGGAAATCCAGCGGCTGCTTAAAGGCAATCCG ACGTTGAAGGAGCCGCTGATGAAATGCGCCGACAAGTATAAGGCCGTCGTCGATGTTGACGTCAGCGTGGCGATCAAGGCGGTTCGTGTAGGGAACCCGG GTGCCGGAGAAGGAGCGATGAACGACGCTGGAAACAAGTCCGATTCGTGCGAGCGTGGATTTCAAGGAGCGAAGTCGCCGTTGACTGACATGAATAACGC TGTACGTAACGTTGCTGATGTGGCGTCCTCTATTATTAGCCTGTTGATTTGA
AA sequence Show only first row Show all	>Lus10027947 pacid=23181196 polypeptide=Lus10027947 locus=Lus10027947.g ID=Lus10027947.BGIv1.0 annot-version=v1.0 MAPHPTQLTGALTSAALFLLIITTTTTHASSSVVAAASNLITQTCKQTPDYNLCVSSLTADTRGPKANDVQTLALIMIDVVSNKAAATSEEIQRLLKGNP TLKEPLMKCADKYKAVVDVDVSVAIKAVRVGNPGAGEGAMNDAGNKSDSCERGFQGAKSPLTDMNNAVRNVADVASSIISLLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10027947 [exp]	0	1
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Lus10002196 [exp]	2.8	0.7606
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	3.6	0.8111
AT3G19300			Protein kinase superfamily pro...		Lus10034770 [exp]	5.5	0.7589
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	5.8	0.7827
AT2G03630			unknown protein		Lus10026665 [exp]	6.9	0.7291
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	7.1	0.7827
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	8.2	0.7827
					Lus10011218 [exp]	9.7	0.7785
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	11.0	0.7742
AT5G44410			FAD-binding Berberine family p...		Lus10042383 [exp]	11.4	0.6380

Compare expression of checked genes

Lus10027947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.