Plant FIBer expression Database

Lus10027948 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G32470 690 / 0 Haem oxygenase-like, multi-helical (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000819
[exp]
904 / 0 AT5G32470 575 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10021977
[exp]
856 / 0 AT5G32470 728 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10042514
[exp]
854 / 0 AT5G32470 727 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10021976
[exp]
103 / 1e-25 AT5G32470 94 / 3e-23 Haem oxygenase-like, multi-helical (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G022700
[exp]
820 / 0 AT5G32470 756 / 0.0 Haem oxygenase-like, multi-helical (.1)
Potri.013G049300
[exp]
806 / 0 AT5G32470 766 / 0.0 Haem oxygenase-like, multi-helical (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0230 HO PF03070 TENA_THI-4 TENA/THI-4/PQQC family
Representative CDS sequence
>Lus10027948 pacid=23181229 polypeptide=Lus10027948 locus=Lus10027948.g ID=Lus10027948.BGIv1.0 annot-version=v1.0
ATGCTTTCGTTGACCCCACTCACCACCCTGCTATTCAGTCGCTTCATCCATCTCCCTCCCGCCGTCGCCGCCCGTCGATCGACTGGTCTCTTATCCTCCT
CCTCTTGCTTACCGGCCACCTTGCGGCGGCGATCCTTCTCAATCCCTACCATGCTACCGAGCCTTTCAAATCTGCTATCCTCCTCCGCCATGTCCAGCGC
CTCCGCAACTACTCCCGGCAGCAGCAACTCCGAGGACGGGTTTGCGGCCAAGGCGTGGATCAAGTCCCGCCGCGAATTGCATTTCGCGATGTATACTCCT
TTCTTTGTGTGTTTGGCTACCGGTAATTTGAAGATTGAGAGCTTCAGGCATTACATCGCTCAGGACTTCCACTTCCTCAAAGCCTTTGCTCATGCATATG
AATTAGCTGAAGAATGCGTTGATGGTGGTGATGCAAAGCTAGCCATTGCTGACTTGAGAACGGCTGTTCTGGAGGAGCTGAAGATGCATAGTTCGTTTGT
GCAGGAATGGGGTATTGACCCTGCGAAGGAAGTTGTTGCAAATTCTGCAACTGTCAGATACACAGAGTTCTTATTGGCTACAGCATCTGGAAAAATTGAA
GGAGTGAATGGTCCTAGTAAACTGGCTACTCCTTTGGAGAGGACAAAAGTTGCGGCTTACACTCTTGGTGCCATGACACCTTGCATGCGGCTTTATGCTT
TTCTGGGGAAGGAATTACAAGCGTTTGTCGATGCAACTTTTGGCAGCCACCCATATAAGAAGTGGATTGAAAATTATTCGTGTGATGGTTTTCAAGCATC
TGCTTTTCAAACTGAAGACTTGCTGGATAAACTTACTGTCTCTTTGACAGGAGAAGAGCTAGATGTCATTCAGAAGCTTTATCAGCAAGACATGAAACTT
GAAACCGAGTTCTTCAGTGCACAGCCAATCGTTCAGCCTACTGTAGTGCCTTTGACAAAAGAGCACAACCCTGGCAAAGATCGCCTTGTGATTTTCACTG
ATTTTGATTTGACATGTACTGTTGTGGACTCATGTGCAGTCTTGGCTGAGATTGCTATCATAACTGAAAATCAAATTACTCGAGCAGAGTTGAAGAACAC
ATGGGGGCTTCTCTCTACACAGTATACAGAGGAGTATGAACAGTGCATGGAAAGCGTATTACCCTCTAAAAAAGTGGAGTTCAACTATGAAGCTATCAGT
AAAGCACTTGAGAAACTATCAGAATTTGAAAAAAGAGCAAACTCTAGAGTGATCAAGTCAGGAGTCCTCAAAGGTATGAATCTCAAAGACATAAAACAAG
CCGGCGAGAGAATGATTCTTCAAGATGGCTGCAGCAGTTTCTTCCGGAAAATCGCAGGGAACGAGAAGCTGAATTCAAATGTACATGTGCTGTCATTTTG
TTGGTGTGCTGATCTCATTAGATCATCTTTCTCATCAGAGGGTTTGGATGTTCTCACTGTTCATGCAAATGACCTGATTATCGAAGAATCAGTAACCACC
GGAGAGATTGTCAACAAGGTCGAGTCCCCATTGGACAAGGTCCAAGCTTTCCGGGACATAGTGAAGAAGAATTACGAAGACGATAAAAGGAATCGCACTG
TTTACATCGGGGACTCCGTGGGTGACTTGCTCTGCCTGCTTCAAGCAGATGTAGGGATTGTTATCGGTTCTAGCTCGAGCCTAAGAACAGTAGGAAGTCG
GTTCGGGATTTCTTTCGTACCGTTGTTCCGGGGAGTACTGGAAAAGCAGAGAGAATGTAGTAGTGAAGGAAGCTGCCACTGCTCTATGGGGGAGAGCCTG
TCTGGGACTTTGTACACAGTTTCTAGCTGGGCTGAGATAGATGCCTTGATTTTGGGATAG
AA sequence
>Lus10027948 pacid=23181229 polypeptide=Lus10027948 locus=Lus10027948.g ID=Lus10027948.BGIv1.0 annot-version=v1.0
MLSLTPLTTLLFSRFIHLPPAVAARRSTGLLSSSSCLPATLRRRSFSIPTMLPSLSNLLSSSAMSSASATTPGSSNSEDGFAAKAWIKSRRELHFAMYTP
FFVCLATGNLKIESFRHYIAQDFHFLKAFAHAYELAEECVDGGDAKLAIADLRTAVLEELKMHSSFVQEWGIDPAKEVVANSATVRYTEFLLATASGKIE
GVNGPSKLATPLERTKVAAYTLGAMTPCMRLYAFLGKELQAFVDATFGSHPYKKWIENYSCDGFQASAFQTEDLLDKLTVSLTGEELDVIQKLYQQDMKL
ETEFFSAQPIVQPTVVPLTKEHNPGKDRLVIFTDFDLTCTVVDSCAVLAEIAIITENQITRAELKNTWGLLSTQYTEEYEQCMESVLPSKKVEFNYEAIS
KALEKLSEFEKRANSRVIKSGVLKGMNLKDIKQAGERMILQDGCSSFFRKIAGNEKLNSNVHVLSFCWCADLIRSSFSSEGLDVLTVHANDLIIEESVTT
GEIVNKVESPLDKVQAFRDIVKKNYEDDKRNRTVYIGDSVGDLLCLLQADVGIVIGSSSSLRTVGSRFGISFVPLFRGVLEKQRECSSEGSCHCSMGESL
SGTLYTVSSWAEIDALILG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G32470 Haem oxygenase-like, multi-hel... Lus10027948
[exp]
0 1
AT4G21585 ENDO4 endonuclease 4 (.1) Lus10018451
[exp]
4.8 0.8562
AT1G24530 Transducin/WD40 repeat-like su... Lus10006460
[exp]
18.2 0.8385
AT2G37195 unknown protein Lus10026508
[exp]
20.8 0.8205
AT4G02630 Protein kinase superfamily pro... Lus10024813
[exp]
30.0 0.7491
AT5G12290 DGS1 dgd1 suppressor 1 (.1) Lus10038461
[exp]
31.5 0.8263
AT4G33250 ATTIF3K1, EIF3K eukaryotic translation initiat... Lus10027668
[exp]
34.5 0.8291
AT1G08220 unknown protein Lus10005355
[exp]
35.3 0.8103
AT2G35930 PUB23 plant U-box 23 (.1) Lus10013352
[exp]
43.2 0.8104
AT1G09300 Metallopeptidase M24 family pr... Lus10031427
[exp]
50.3 0.8077
AT1G09280 unknown protein Lus10008045
[exp]
58.1 0.7774

Lus10027948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.