Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18480 586 / 0 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT1G77130 121 / 2e-29 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT3G18660 121 / 2e-29 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT1G08990 120 / 3e-29 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT1G54940 117 / 6e-28 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT4G16600 112 / 2e-26 Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G35710 108 / 3e-25 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2.3) AT4G33330 108 / 5e-25 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT1G60470 71 / 3e-13 ATGOLS4 galactinol synthase 4 (.1) AT4G26250 68 / 2e-12 ATGOLS6 galactinol synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000817 [exp] 422 / 2e-148 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1) Lus10000818 [exp] 334 / 4e-112 AT5G18480 355 / 7e-120 plant glycogenin-like starch initiation protein 6 (.1) Lus10033485 [exp] 123 / 6e-30 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10018922 [exp] 121 / 4e-29 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10020890 [exp] 119 / 1e-28 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10028623 [exp] 119 / 2e-28 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10004717 [exp] 114 / 3e-27 AT4G16600 673 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10008518 [exp] 105 / 4e-24 AT2G35710 632 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2.3) Lus10021731 [exp] 105 / 5e-24 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G049100 [exp] 592 / 0 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.005G187900 [exp] 122 / 1e-29 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.003G076800 [exp] 120 / 2e-29 AT4G16600 633 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.007G107200 [exp] 121 / 3e-29 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G061600 [exp] 120 / 8e-29 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.001G158000 [exp] 112 / 1e-26 AT4G16600 678 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.014G029900 [exp] 112 / 2e-26 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.013G022900 [exp] 109 / 2e-25 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.005G033500 [exp] 106 / 2e-24 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.002G191600 [exp] 71 / 4e-13 AT2G47180 565 / 0.0 galactinol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10027949 pacid=23181129 polypeptide=Lus10027949 locus=Lus10027949.g ID=Lus10027949.BGIv1.0 annot-version=v1.0 ATGAAAATAGCGCCGCTATGTCTCCTGCTTGCGGTGGTCTTCCTTCACTCCGCAGCTGCGCTTCCACCGAAGAGAACCCAGAACGCTTACGTAACCCTCT TGTATGGGGACGAATTCTTGCTGGGAGTTAGGGTTCTGGGGAAGTCGATTCGGGACACTGGATCGAAGAAAGATATGGTGGCTTTGGTCTCTGATGGCGT CTCCGACTACGCCAAGAGGCTTTTGGAGGCTGACGGGTGGATGATAGAGACGATTAGCTTGTTAGCGAATCCTAATCAGATTCGTCCAACAAGGTTTTGG GGCGTGTACACGAAGCTAAAGATCTTCAACATGACAAATTATCAGAAAGTTGTATATCTCGATGCAGACACTATAGTGGTAAAAGACATTGAGGATCTCT TCCAGTGTAGTAAGTTTTGTGCCAACCTCAAGCATTCAGAAAGGTTGAATTCTGGAGTCATGGTGGTGGAACCATCCGAAGCACTTTTCAATGACATGTT TGCCAAAGTGAACACAATGTATTCTTACACAGGAGGAGATCAGGGTTTCCTGAATTCATATTACCCGGACTTTCCAAATGCTCGTCTCTTTGAACCTGGT TTATCAAAAGAAGAGAGGATTTCTAGGCCTGTGCCTGATATGGAGAGGCTATCTACCCTTTACAATGCAGATGTTGGTCTCTACATGCTTGCTAACAAGT GGATGGTTGATGAGAGTGAACTCCGTGTTATACACTATACTCTTGGTCCCCTTAAACCTTGGGATTGGTGGACTTCCTGGCTGCTGAAACCGGTTGACGC GTGGCAGAACATCCGTGTGAAACTTGAAGAAACCCTCCCTGGCACAGGGGGTGGCAAGAATCCCAAAGACCAACTACTTGTCAAATTTCTTTTCTTTTTG CCGCTATGTGCCCTAGCCTTCTGTTACTATCAATCTTCTATTCAGGCTCGCTTGTTCTGTAGGAATTCTGTATACGAACATATCAGACACTTGTATTACA AGATAAGATCGAATGGAGCTCTTGCCTACAATGGTGTTTCTTCATCATTGCCCATCAGTTATACGCAACAGTGCAAGTTCCCTGCTTATCTCGGCGGACT TTCTATAGCTGCATGTTTCATGGCTGCATTGATGTCCCTCGCGTTTAGTATGGCCATCGTGCCACATCAAGTAATGCCATGGACTGGTTTGCTTTTGATG AAAAGGTTTTTTCTTTTCCCACCTGCTTTTTTGGCCTTTGGAGTCCCGGCTTTGCCCCATATTGTCGGTGTTACTGCACTATTCGCGAGGTTGGGGCTGA TTGTTGCTGGAGGGATGATTCTTGCATCGTTCATGACATATGCAGCAGAGCATCTTTCAATCAGATCGTACTTGAAAGGCTTTGAAGACCGGGATTTAAC ACGAGGGAGGAGCTTGTGTTTTGCATGA
AA sequence Show only first row Show all	>Lus10027949 pacid=23181129 polypeptide=Lus10027949 locus=Lus10027949.g ID=Lus10027949.BGIv1.0 annot-version=v1.0 MKIAPLCLLLAVVFLHSAAALPPKRTQNAYVTLLYGDEFLLGVRVLGKSIRDTGSKKDMVALVSDGVSDYAKRLLEADGWMIETISLLANPNQIRPTRFW GVYTKLKIFNMTNYQKVVYLDADTIVVKDIEDLFQCSKFCANLKHSERLNSGVMVVEPSEALFNDMFAKVNTMYSYTGGDQGFLNSYYPDFPNARLFEPG LSKEERISRPVPDMERLSTLYNADVGLYMLANKWMVDESELRVIHYTLGPLKPWDWWTSWLLKPVDAWQNIRVKLEETLPGTGGGKNPKDQLLVKFLFFL PLCALAFCYYQSSIQARLFCRNSVYEHIRHLYYKIRSNGALAYNGVSSSLPISYTQQCKFPAYLGGLSIAACFMAALMSLAFSMAIVPHQVMPWTGLLLM KRFFLFPPAFLAFGVPALPHIVGVTALFARLGLIVAGGMILASFMTYAAEHLSIRSYLKGFEDRDLTRGRSLCFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10027949 [exp]	0	1
AT1G63500			Protein kinase protein with te...		Lus10008530 [exp]	5.0	0.9102
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	7.6	0.9184
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	9.2	0.9112
AT2G38410			ENTH/VHS/GAT family protein (....		Lus10025264 [exp]	10.0	0.9208
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10026486 [exp]	11.0	0.8874
AT1G10210		ATMPK1	mitogen-activated protein kina...		Lus10033197 [exp]	11.8	0.8799
AT3G17920			Outer arm dynein light chain 1...		Lus10041988 [exp]	12.3	0.8782
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	12.7	0.9065
AT1G69340			appr-1-p processing enzyme fam...		Lus10037119 [exp]	18.7	0.8840
AT4G32140			EamA-like transporter family (...		Lus10041032 [exp]	19.0	0.9018

Compare expression of checked genes

Lus10027949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.