Plant FIBer expression Database

Lus10027950 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000816
[exp]
543 / 0 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10027950 pacid=23181151 polypeptide=Lus10027950 locus=Lus10027950.g ID=Lus10027950.BGIv1.0 annot-version=v1.0
ATGGAGACGACGACGACGACGACGACGACGACGATGGCCGGCGGGGGAGAAGCAGAGTCGTTACACAAGCGGCACATGATCTGGAGCTTACTGTCCCAAC
TCTCCTTCAACCTATCAATCTTCCTCTTCAAACTCCCACCGTTCTCCATCCCAATCCTCATGATCGGCTGGATAGCCGCCATGGTATTCACATACACCCG
CAACGATCCAACCCACCATAGCCCTAACCGAACCCGAATCGGACGATTCAAGAGGACTGCTCTTGAGGTCGCCTGTTTGCTAGCCGCTCTGGCGACGAGA
TACTTCTACGATCCGTACATCAACGTCGCCAACAAACAGCTCGAGACGTATTACTACGCTGTGTTGATCTTGGTCACGCATCAGGTTTATACGCATCTCA
AGTCCTTCTGGGGAGTCCCTGATTTGAAATTCGGGGACCTCTGGTCGGTGATCGTGATGCAGAGCTTGGTTTATTGGATGCCGACGGAGCTGATGGCTGC
TTCAACGCTTGCAGTGTGCTTCGCTGCGATTTCGTGTAGGTACGAGTCGTTGGATGATCGGGAGAGTGTCATCCCTGATCCGTTTGGGAGGTTTCTAGGG
TTTTGTTTGGCTATTGCGGCGTTTGGGTATCCAATGTTTCTCTTGGTTCAGGGTTACCAGGAGGGTGTTGCTGGAGATGAGAAAAGATTGGGGTTGTTGG
GATTGAAAGCTGAGGTACAGTCAGGGTTTAAGCACTCTTTGATGACGAGTTTGGTTCTGTTCTGCACTTTGATTGTGCAGTGGATAGACACTAAGGTCTA
TAAGGATGGATTGATGGAGAAGAAGATGAAGAAGAAGGAACAAGTGAATCCTGAGCCGATTGGGATTCATAAGGAGTCTGTGGAGCCTCTCAAAACAGCT
GCTGGCACTGATTCTTCCCCTGAAGCCAAGACTGATTATGAAGTCCGCAAGAGTAAAGAAGAATGA
AA sequence
>Lus10027950 pacid=23181151 polypeptide=Lus10027950 locus=Lus10027950.g ID=Lus10027950.BGIv1.0 annot-version=v1.0
METTTTTTTTTMAGGGEAESLHKRHMIWSLLSQLSFNLSIFLFKLPPFSIPILMIGWIAAMVFTYTRNDPTHHSPNRTRIGRFKRTALEVACLLAALATR
YFYDPYINVANKQLETYYYAVLILVTHQVYTHLKSFWGVPDLKFGDLWSVIVMQSLVYWMPTELMAASTLAVCFAAISCRYESLDDRESVIPDPFGRFLG
FCLAIAAFGYPMFLLVQGYQEGVAGDEKRLGLLGLKAEVQSGFKHSLMTSLVLFCTLIVQWIDTKVYKDGLMEKKMKKKEQVNPEPIGIHKESVEPLKTA
AGTDSSPEAKTDYEVRKSKEE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10027950
[exp]
0 1
AT1G19360 RRA3 reduced residual arabinose 3, ... Lus10026327
[exp]
6.5 0.8424
AT1G80170 Pectin lyase-like superfamily ... Lus10026798
[exp]
7.8 0.8924
AT2G36960 MYB TKI1 TSL-kinase interacting protein... Lus10013816
[exp]
8.8 0.8664
AT2G23790 Protein of unknown function (D... Lus10000580
[exp]
12.6 0.8872
AT2G44130 Galactose oxidase/kelch repeat... Lus10016214
[exp]
15.1 0.8273
AT4G26590 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10016632
[exp]
23.2 0.8256
Lus10042098
[exp]
27.7 0.8222
AT4G26410 Uncharacterised conserved prot... Lus10034621
[exp]
30.5 0.7929
AT4G26590 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10016631
[exp]
35.7 0.7879
AT1G76880 Trihelix Duplicated homeodomain-like su... Lus10028584
[exp]
37.7 0.8645

Lus10027950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.