Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08590 1176 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 1135 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 745 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT3G49670 655 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 655 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20270 617 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 608 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 593 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G28440 592 / 0 HSL1 HAESA-like 1 (.1) AT1G34110 555 / 0 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000814 [exp] 1824 / 0 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 1114 / 0 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10038930 [exp] 726 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10027221 [exp] 725 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10039641 [exp] 637 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 627 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10037358 [exp] 607 / 0 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10013562 [exp] 591 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10036242 [exp] 589 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021700 [exp] 1394 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 1387 / 0 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 1231 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G107600 [exp] 753 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 739 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.007G009200 [exp] 642 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 634 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 629 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 616 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G241500 [exp] 613 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027951 pacid=23181230 polypeptide=Lus10027951 locus=Lus10027951.g ID=Lus10027951.BGIv1.0 annot-version=v1.0 ATGGAAGCCAGCAAGTTGATTTTCTTCATTGGCTGCTGCTTCTCCCTAGCTGTTTTAGCTAAGGGAGCTACTATACACAATGAGGTGTCGGCTCTTCTCG CGATGAAATCGAGCCTTGTCGATTCCTCGAATCTTCTGGCTGATTGGACGTTGGGAGGCAATAATCACTGCAGGTGGACTGGGGTGAGCTGCAACTCTAG AGGGTTTGTGGAAAGGCTCGACCTTTCCAACATGAATCTCACCGGGAGGATCTCGGATCGGATTCAGGAGCTGAAAGGTCTCGCCTTTTTCTCCGTTGCC AACAATGGGTTCGCTTCTGCATTGCCGGAATCTCTAGGGAATCTTACTTCCTTGACGATGGTTGATTTCAGCATGAACAACTTCATTGGCAGCTTCCCTA CTGGACTTGGACTGGCTCCGGGTTTGACTTCGGTCAACGCTTCGAGCAATGACTTCTCAGGGCTTCTCCCCGAGGATCTTGGCAATGCGACGTTGCTGGA AAGTCTGGATTTTCGAGGGAGTTTCTTCGAAGGGTCGATCCCTGGATCATTCAGTAATTTGCAGAAGCTGAAGTTTCTTGGCCTTTCTGGTAATAACCTG ACTGGTAATTTACCGAAGAATATCGGCCGAATGACTTCTCTAGAGACGATAATACTGGGATACAACGGTTTCGAAGGAGAGATTCCTGCCGAGATTGGCA ATCTGACGAATATTCGGTATCTTGATTTGGCTGTTGGCAGTCTGGGAGGACAAATTCCTACCGAATTGGGTAAGCTGAGAAAGCTCACCACTGTGTTTCT GTACAGAAACAACTTCATCGGCAAGATCCCACCGGAACTCGGCAGCATTCAGACTCTTGTAATGCTCGATCTCTCCGATAACCAAATTTCAGGGGAGATA CCATTGGAGATTGCTGAGCTGAAGAATCTCGAGCTGTTGAACTTGATGCGCAACAATCTCACCGGTTCAATCCCCAGCCAGCTAGGCAACCTGACCAAAT TACGGGTACTCGAGCTTTGGAGGAACAACTTCGTAGGATCGTTGCCAACGAATCTCGGAAAGAACTCGCCGTTGCAGTGGCTGGACGTGTCATCTAATTT TCTCTCCGGTACGATTCCGACAAGTCTATGCGATTCAGGGAACCTCACCAAGCTGATCCTGTTCAAGAACTCATTCACAGGTTCGATCCCAACGAGCCTC TCGACTACTTGCAAGTCACTGGTTCGTGTCAGGATGCAAGAGAATCTTCTCTCCGGGGAAATTCCTGTAGGGTTCGGAACCCTACCGGGGCTTCAGAGGC TGGAATTGGTTAACAACAATTTCACAGGCCAAATTCCAGACGATCTTTCTTTATCAACTTCTCTCAATTTCATCGATGTCTCCAGGAACCACCTCGAGTC CTCTCTCCCTTACAACATCCTTTCGATTCCTACCCTTCAGACATTTCTGGCAGCCGGGAATAGCTTGCAGGGGAAGATACCAGCCGAGTTCCAGGACTGT CCGTCACTGTCAAGTCTCGATCTTTCCAACAACCATTTTTCCGGAAGGCTTCCAGAGAGCATTGCTTCGTGCGAAAAGTTGGTGACTTTGAATCTGAGAA GCAACCAGTTCAGTGGAGGAATCCCAAATGCATTCTCCAGAATGCCAACTTTATCCATCCTTGACTTGTCCAGCAATTCTCTAACCGGTCGAATTCCACC AAGCCTGGGAAGCTCACCGGCTTTGGAAATGATCAATGTCTCCCACAACAATCTCGAAGGTCCGGTTCCTTCAAATAACATGTTTACTGCTATAAATCCC AATGATCTAGTGGGAAACCCTAGCCTTTGCGGCGGGGTACTCCCACCGTGTTATTCTTCTTTGATGCTTCACACCTCGAAGCAATATCAAAAGAACCCCC ACATCCATCGCATTCTCCTCGGACTCATCGTGGGCATTTCCGTAATCCTAACTCTCGGCATTGCATTCTTTGGCGGTAGATCGGTCTACAGAAGGTGGTA CTTGTGCAACAGTTTCTTCGACGATTATTTCAACAAGAGTACCAGAGGAGAATGGCCGTGGACGTTAGTAGCATTCCAGAGGCTCAGCTTCACTAGCAAC GACATTCTGACTAGCATCAAGGAGTCAAACATCATCGGCATGGGAGGATCTGGAATCGTCTACAAAGCTGGAGCAGTGGCGGTGAAGAAGCTATGGAGAA CAGAACCTGACATTGAAAATGGCGGAGATGACCTATTTGGAGAGGTCAGCCTTCTCGGGAGTCTCCGACATAGGAACATTGTGAAGGTGTTAGGGTATCT GCACAACCAAAAAGACGTGATGATGATTTATGAGTACATGCCAAATGGAAACTTAGGAGATGCCTTGCATAGCAAGGAAGAATCCGAGAGGTTGCTTGTG GATTGGGTTTCGAGGTATAACATAGCAGTCGGAGTCGCTCAGGGACTGCATTACCTCCACCATGATTGCCATCCTCAAATTATCCATCGCGACATCAAGT CCAACAACATCCTGCTTGATGCTAATCTCGATGCAAGGATTGCCGATTTTGGGCTGGCGAGAACGATGGCTCATAAGAGCGAGACCGTCTCGATGGTGGC TGGATCTTACGGCTACATTGCACCTGAATATGGATACACATTGAAGGTTGATGAGAAGAGCGACATATACAGCTTCGGAGTCATGCTTTTGGAGCTCCTG ACTGGGAAAATGCCTATTGAGCCTGCATTTGGAGAATCTGTTGATATTGTGGAATGGATCAGAACCAAGATGAGAAACAATAAACCATTGGAAGAAGTAC TTGACTCGACCATTGCGGGAAAATGCAAGCATGTTCAAGAGGAGATGCTTCTGGTTCTACGAATCGCGATTCTATGCACCGCAAAGCTTCCGAAGGAGAG GCCATCAATGAGGGACGTCATAACAATGCTTAGAGAGGCAAAGCCAAGAAGGAAAAGCATTTCTCACATCTCTACCAAAGAGAAGCCTATCTTTAGCAAC TCCCCAGTTATAGGCCTTCTGTAA
AA sequence Show only first row Show all	>Lus10027951 pacid=23181230 polypeptide=Lus10027951 locus=Lus10027951.g ID=Lus10027951.BGIv1.0 annot-version=v1.0 MEASKLIFFIGCCFSLAVLAKGATIHNEVSALLAMKSSLVDSSNLLADWTLGGNNHCRWTGVSCNSRGFVERLDLSNMNLTGRISDRIQELKGLAFFSVA NNGFASALPESLGNLTSLTMVDFSMNNFIGSFPTGLGLAPGLTSVNASSNDFSGLLPEDLGNATLLESLDFRGSFFEGSIPGSFSNLQKLKFLGLSGNNL TGNLPKNIGRMTSLETIILGYNGFEGEIPAEIGNLTNIRYLDLAVGSLGGQIPTELGKLRKLTTVFLYRNNFIGKIPPELGSIQTLVMLDLSDNQISGEI PLEIAELKNLELLNLMRNNLTGSIPSQLGNLTKLRVLELWRNNFVGSLPTNLGKNSPLQWLDVSSNFLSGTIPTSLCDSGNLTKLILFKNSFTGSIPTSL STTCKSLVRVRMQENLLSGEIPVGFGTLPGLQRLELVNNNFTGQIPDDLSLSTSLNFIDVSRNHLESSLPYNILSIPTLQTFLAAGNSLQGKIPAEFQDC PSLSSLDLSNNHFSGRLPESIASCEKLVTLNLRSNQFSGGIPNAFSRMPTLSILDLSSNSLTGRIPPSLGSSPALEMINVSHNNLEGPVPSNNMFTAINP NDLVGNPSLCGGVLPPCYSSLMLHTSKQYQKNPHIHRILLGLIVGISVILTLGIAFFGGRSVYRRWYLCNSFFDDYFNKSTRGEWPWTLVAFQRLSFTSN DILTSIKESNIIGMGGSGIVYKAGAVAVKKLWRTEPDIENGGDDLFGEVSLLGSLRHRNIVKVLGYLHNQKDVMMIYEYMPNGNLGDALHSKEESERLLV DWVSRYNIAVGVAQGLHYLHHDCHPQIIHRDIKSNNILLDANLDARIADFGLARTMAHKSETVSMVAGSYGYIAPEYGYTLKVDEKSDIYSFGVMLLELL TGKMPIEPAFGESVDIVEWIRTKMRNNKPLEEVLDSTIAGKCKHVQEEMLLVLRIAILCTAKLPKERPSMRDVITMLREAKPRRKSISHISTKEKPIFSN SPVIGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08590			Leucine-rich receptor-like pro...		Lus10027951 [exp]	0	1
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10000605 [exp]	1.0	0.9058
AT3G60480			unknown protein		Lus10000560 [exp]	2.0	0.8636
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10016354 [exp]	3.9	0.8093
AT3G47570			Leucine-rich repeat protein ki...		Lus10033363 [exp]	4.0	0.7907
AT5G07720			Galactosyl transferase GMA12/M...		Lus10019076 [exp]	10.5	0.8143
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10016179 [exp]	11.5	0.7802
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10017777 [exp]	15.5	0.7609
AT2G23690			unknown protein		Lus10016785 [exp]	17.8	0.7036
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	21.3	0.7247
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010410 [exp]	21.3	0.6966

Compare expression of checked genes

Lus10027951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.