Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04350 738 / 0 Plant protein of unknown function (DUF946) (.1) AT5G18490 714 / 0 Plant protein of unknown function (DUF946) (.1) AT1G04090 634 / 0 Plant protein of unknown function (DUF946) (.1) AT5G43950 622 / 0 Plant protein of unknown function (DUF946) (.1) AT2G44230 469 / 2e-160 Plant protein of unknown function (DUF946) (.1) AT2G44260 469 / 2e-160 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) AT3G01880 411 / 4e-137 Plant protein of unknown function (DUF946) (.1) AT3G01870 402 / 8e-134 Plant protein of unknown function (DUF946) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000813 [exp] 1100 / 0 AT3G04350 761 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10024955 [exp] 647 / 0 AT5G43950 696 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10022871 [exp] 642 / 0 AT5G43950 693 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10017580 [exp] 462 / 1e-157 AT2G44260 587 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10033542 [exp] 459 / 3e-155 AT2G44260 585 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017579 [exp] 447 / 1e-151 AT2G44260 553 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017582 [exp] 438 / 8e-148 AT2G44260 582 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10011036 [exp] 67 / 5e-11 AT4G17140 3546 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10003007 [exp] 67 / 5e-11 AT4G17140 3544 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048300 [exp] 775 / 0 AT3G04350 755 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.014G193100 [exp] 634 / 0 AT5G43950 681 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.001G232500 [exp] 507 / 4e-175 AT2G44260 729 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.018G087400 [exp] 506 / 6e-175 AT2G44260 691 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.009G025102 [exp] 501 / 1e-172 AT2G44260 746 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.002G256802 [exp] 191 / 4e-57 AT3G04350 210 / 1e-64 Plant protein of unknown function (DUF946) (.1) Potri.001G148800 [exp] 54 / 3e-07 AT4G17140 3708 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Potri.008G100600 [exp] 49 / 1e-05 AT1G48090 3782 / 0.0 calcium-dependent lipid-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06101 [flax] [poplar] Vps62 Vacuolar protein sorting-associated protein 62
Representative CDS sequence Show only first row Show all	>Lus10027952 pacid=23181177 polypeptide=Lus10027952 locus=Lus10027952.g ID=Lus10027952.BGIv1.0 annot-version=v1.0 ATGATGATTGGGTGTGATTGCTTCTACTGGAACCAACAATCCGTTGACTGTGACTTGCTGTCGGAGGAACATCAACCGCCGCCGTCCCCGCCGCAGAGAT TCTCTTTGCCGGCTCCTCTTCCTCAATGGCCTCAAGGTGATGGATTTGGTAGTGGTGTGATGAACCTGGGAGAGATAGAGGTTATCCAAGTGACCAAGTT TGAGAGTGCTTGGAGATGCATCCAATTGGGTGGGAAGGCACAGTTAGGAGCGTCATTTTACAAGCCTGTTGGAATCCCTGATGGTTTTCACTGCCTTGGT TACTATTGCCACCCCAATGATCACCATCCATTGAGAGGCTATGTTCTCGTGGCTCGCGAAAAACCCCAACCGAATTCGGATCCTCCAGCGTTGAGCAAGC CGGTCAACTATTCACTGATATGGAGCACCGGCTCGCGCTACAGTGAAAACGGCTACTTCTGGCTGCCAAATCCACCAACTGGTTACAAGGCCATGGGCGT GGTGGTGACTCGTGACCCGAATGAGCCAGACGTGGAGGAAGTTAGATGCGTTCGAGAAGACTTGACGGAGAGTTGCGAGACTTGGGATCTCGTGTTTTCG TTGGACGGCAAAGGTTCCAACCAGCCATTCCAGATTTGGAGCACTAAGCCTTGTAGGATGGGAATGTTTGGTAGAGGCGTTTCCGTTGGTACGTTTTACT GCCGGAGTAGCTTTATGAATTCGGAAGAAACTTTGGTCAGTGTAGCGTGCTTGAAGAATATTGATGGCTCTTTAAGTGCAATGCCGAACTTGGACCAGAT TCATGCTTTGATTCAGCACTATGGTCCTAAGATGTACTTCCACCCGGAAGAGGATTACTTGCCTTCGTCGGTGGAGTGGTTTTTCAAGAACGAAGCACTT CTACATAACGACAGTTTGGGGAAAGGCGAGTCTATTGATTATACGGGTTCGAACTTGCCAACCGGAGGCGTAAATGATGGGGAGTATTGGATCGATTTGC CTGAAGATGGTGATGCCAGGAACGATATTAAGAAAGGGAACTTGGAAAGTTCAGAGCTTTATGTCCATGTGAAACCAGCATTTGGAGGGTCCTTCACGGA CATAGCAATGTGGGTGTTTTGTCCGTTCAACGGACCGGTTAACCTTAAGATAGGGCTTGTGAGTGTACAAATGTCGAGGATTGGTGAACATGTTGGAGAC TGGGAGCATGTAACACTTCGCATTAGCAACTTCACGGGAGAGCTGTGGCAAGTGTTTTTCTCGGAGCACAGTGGAGGAAGATGGGTGGACGCTTGGGAAG TGGAGTTCGTTGAAGGTGCTAACAAGCCGATTGTCTATTCTTTGAAACATGGTCATGCTAGCTTTCCGCATGAGGGTATGTTTCTTCAAGGTGCGACGAA GCTAGGAATTGGGGTGAGGAATGATACCGCTCGAAGCAACTACTTCATCGATTCTAGTATAAGATATCGGCTAGTTGCAGCCGAGTATCTTGGGAAAGAA GTTGTTCCGGAGCCGAGCTGGCTGCAATACATGAGAGAATGGGGTCCTACCATTGTATATGATTCACGATCTGAGCTTGACAAGATAATCAATCTTCTCC CATTCTTTGTTCGTTTTTCGATGGAGAATCTCTTTGACTTGTTCCCAACTGAGCTGTATGGGGAGGAGGGACCAACTGGACCGAAGGAAAAAGACAACTG GATCGGAGATGAGATATGCTGA
AA sequence Show only first row Show all	>Lus10027952 pacid=23181177 polypeptide=Lus10027952 locus=Lus10027952.g ID=Lus10027952.BGIv1.0 annot-version=v1.0 MMIGCDCFYWNQQSVDCDLLSEEHQPPPSPPQRFSLPAPLPQWPQGDGFGSGVMNLGEIEVIQVTKFESAWRCIQLGGKAQLGASFYKPVGIPDGFHCLG YYCHPNDHHPLRGYVLVAREKPQPNSDPPALSKPVNYSLIWSTGSRYSENGYFWLPNPPTGYKAMGVVVTRDPNEPDVEEVRCVREDLTESCETWDLVFS LDGKGSNQPFQIWSTKPCRMGMFGRGVSVGTFYCRSSFMNSEETLVSVACLKNIDGSLSAMPNLDQIHALIQHYGPKMYFHPEEDYLPSSVEWFFKNEAL LHNDSLGKGESIDYTGSNLPTGGVNDGEYWIDLPEDGDARNDIKKGNLESSELYVHVKPAFGGSFTDIAMWVFCPFNGPVNLKIGLVSVQMSRIGEHVGD WEHVTLRISNFTGELWQVFFSEHSGGRWVDAWEVEFVEGANKPIVYSLKHGHASFPHEGMFLQGATKLGIGVRNDTARSNYFIDSSIRYRLVAAEYLGKE VVPEPSWLQYMREWGPTIVYDSRSELDKIINLLPFFVRFSMENLFDLFPTELYGEEGPTGPKEKDNWIGDEIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04350			Plant protein of unknown funct...		Lus10027952 [exp]	0	1
AT2G38820			Protein of unknown function (D...		Lus10018754 [exp]	2.0	0.9418
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10040678 [exp]	3.5	0.8988
AT3G22970			Protein of unknown function (D...		Lus10024840 [exp]	4.6	0.9194
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10040212 [exp]	6.0	0.9297
AT3G47570			Leucine-rich repeat protein ki...		Lus10014500 [exp]	7.4	0.8665
					Lus10034772 [exp]	7.5	0.8971
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10003463 [exp]	8.2	0.9091
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037682 [exp]	9.6	0.8849
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037681 [exp]	11.2	0.8841
AT1G47410			unknown protein		Lus10006481 [exp]	12.2	0.8935

Compare expression of checked genes

Lus10027952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.