Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04370 77 / 5e-16 PDLP4 plasmodesmata-located protein 4 (.1.2) AT1G04520 76 / 2e-15 PDLP2 plasmodesmata-located protein 2 (.1) AT2G33330 74 / 5e-15 PDLP3 plasmodesmata-located protein 3 (.1) AT5G43980 74 / 1e-14 PDLP1, PDLP1A PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) AT3G60720 50 / 9e-07 PDLP8 plasmodesmata-located protein 8 (.1) AT2G01660 45 / 3e-05 PDLP6 plasmodesmata-located protein 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014475 [exp] 78 / 3e-16 AT1G04520 391 / 1e-137 plasmodesmata-located protein 2 (.1) Lus10001052 [exp] 77 / 1e-15 AT5G43980 234 / 1e-75 PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) Lus10023726 [exp] 76 / 2e-15 AT1G04520 389 / 2e-136 plasmodesmata-located protein 2 (.1) Lus10010362 [exp] 52 / 3e-07 AT3G60720 259 / 7e-85 plasmodesmata-located protein 8 (.1) Lus10036006 [exp] 47 / 1e-05 AT2G01660 233 / 1e-74 plasmodesmata-located protein 6 (.1.2) Lus10016710 [exp] 42 / 0.0003 AT2G01660 318 / 1e-108 plasmodesmata-located protein 6 (.1.2) Lus10036497 [exp] 42 / 0.0005 AT3G60720 210 / 9e-67 plasmodesmata-located protein 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048200 [exp] 96 / 1e-22 AT1G04520 214 / 3e-68 plasmodesmata-located protein 2 (.1) Potri.002G257300 [exp] 89 / 2e-20 AT1G04520 243 / 2e-79 plasmodesmata-located protein 2 (.1) Potri.008G171700 [exp] 82 / 1e-17 AT1G04520 349 / 3e-121 plasmodesmata-located protein 2 (.1) Potri.010G065800 [exp] 81 / 2e-17 AT1G04520 337 / 2e-116 plasmodesmata-located protein 2 (.1) Potri.014G067000 [exp] 52 / 2e-07 AT3G60720 306 / 8e-105 plasmodesmata-located protein 8 (.1) Potri.010G108100 [exp] 51 / 3e-07 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.008G133500 [exp] 50 / 9e-07 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.017G130800 [exp] 40 / 0.0009 AT5G37660 314 / 1e-107 plasmodesmata-located protein 7 (.1.2) Potri.004G086000 [exp] 40 / 0.001 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10027953 pacid=23181169 polypeptide=Lus10027953 locus=Lus10027953.g ID=Lus10027953.BGIv1.0 annot-version=v1.0 ATGGATTCTGGTTATATCTTGAAACCCACCTTCAAAGTTTTGATATTTACGTGTTTAACCCTTTCTCTCTGCTCATACTCTGTAACCAGTTCGGACTTCC CAGCACACTACTGGCCGCCGGAGCAGGGCGGCGGCGGTAGCAATGATCACGAATTCGAGCTGCTCCACAAGAAATGCGACAGCGAAAAGGACGACTCCGA GGATTTCAAGACGGCGAGGGAGGCTGCGTTCGCCGCGATGGAGAAACAGCTCGAGGAAGGAGGAGGAGCGATTGGGTTCTGCGAGAAGGAGATCGAGCAC GTGCGGGTGGAGGCCGAGTGCGAAAGGGATCTGAAGGCTCGCGATTGCGGCGAATGCGTGAAAGCAGCGGTGGAGATCGCGGAGGAGAAATGCGGCGGCT CTGTTTCCGGCGAGGTTTATTTGGATCAGTGCTTCCTCAGCTATAGCTACGATTCCGAAGAGACTAGCAGCGGCGTTAAAAACGCGACGCCGAAGACAAT TGCGCTGGCGGCGGGAGGGACAGCCGCCTTTGTTGGTCTCATGGTCTTGCTAAAATTTCTCAAATCTTACAACGACAAAGATGACGACTCCTCGCGAACA CAAGCTTCCCGACCACCCCGAAGCCGCTCCGGTAGTCCCACGTCAACTCAAAATGACGCCGAATATGCTGAAGCTCTTACCCTCGCCGCCGCCGCCGCCA ACCGCAATGTCCAGATCTGCTTGGCGACTGCTGTTGCTACTACGAGTTTGGTTACTGGGTACGGGACGTATCGACTTGTGCATGCTCTTTTCACCAAATT TGGTGCAGCTCTGCTTGCAGGAATAGTCGGAGTTGGGTTAACCGATATGGTTACCGAGGCGCTTGGACCGGCGTTGGCTGTTGCCCGCATGGAGAAAATT AAACCGATGCCTTTGAAATGA
AA sequence Show only first row Show all	>Lus10027953 pacid=23181169 polypeptide=Lus10027953 locus=Lus10027953.g ID=Lus10027953.BGIv1.0 annot-version=v1.0 MDSGYILKPTFKVLIFTCLTLSLCSYSVTSSDFPAHYWPPEQGGGGSNDHEFELLHKKCDSEKDDSEDFKTAREAAFAAMEKQLEEGGGAIGFCEKEIEH VRVEAECERDLKARDCGECVKAAVEIAEEKCGGSVSGEVYLDQCFLSYSYDSEETSSGVKNATPKTIALAAGGTAAFVGLMVLLKFLKSYNDKDDDSSRT QASRPPRSRSGSPTSTQNDAEYAEALTLAAAAANRNVQICLATAVATTSLVTGYGTYRLVHALFTKFGAALLAGIVGVGLTDMVTEALGPALAVARMEKI KPMPLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04370		PDLP4	plasmodesmata-located protein ...		Lus10027953 [exp]	0	1
					Lus10004843 [exp]	100.0	0.7624

Compare expression of checked genes

Lus10027953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.