Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05440 398 / 2e-139 EDA35 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006898 [exp] 606 / 0 AT4G05440 418 / 4e-147 embryo sac development arrest 35, temperature sensing protein-related (.1.2) Lus10027955 [exp] 191 / 3e-61 AT4G05440 132 / 6e-39 embryo sac development arrest 35, temperature sensing protein-related (.1.2) Lus10000812 [exp] 187 / 1e-59 AT4G05440 133 / 7e-39 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G112300 [exp] 452 / 2e-160 AT4G05440 390 / 3e-136 embryo sac development arrest 35, temperature sensing protein-related (.1.2) Potri.017G048600 [exp] 440 / 3e-155 AT4G05440 404 / 6e-141 embryo sac development arrest 35, temperature sensing protein-related (.1.2) Potri.017G049500 [exp] 64 / 4e-13 AT4G05440 63 / 1e-13 embryo sac development arrest 35, temperature sensing protein-related (.1.2) Potri.006G050600 [exp] 0 / 1 AT4G05440 0 / 1 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF07065 [flax] [poplar] D123 D123
Representative CDS sequence Show only first row Show all	>Lus10027954 pacid=23181199 polypeptide=Lus10027954 locus=Lus10027954.g ID=Lus10027954.BGIv1.0 annot-version=v1.0 ATGAAGGTCGTAGAAGTGAACCGATGCCAGATCCAAGAGTGGTACCCAAAGTTCAAGTCTTCCTCAATTCCAACTATGATTCATCAGCTTCCAGAATCTT TTATTGACTACCTACTTGACTCTGGAACACTGCAACTTCCTGTATCCGTTGAGGACGAAGATGCACTGCCAAATAGAGTCCATAATCCCATAGATGAAGA GGATTATCAAGTAACAGAGGAAGGATCCGATGATGAGGCTGAAGAAACACCCCCTTCTTTTCCAGAATTAGAACTGAAGATTAAAAAATCAATATTAGCC CTTGAAGGAGAAGTTTTGCCTAAGCTGAACTGGAGTGCACCAAAGGACTCTGCTTGGATTAGTGTATCAAGAACCTTGCGCTGCACTTCATTCAGTGAGA TCGCACTCTTACTCAAGTCATCTGACTCGTTGGTGCATGATTTGAGTCACGCCTATGATTCATGTTGTGACAAATTATCATCAAGACCCTCTAATTTCCA CCTTGCACTCAGGAAGTGGTATTCTTTATTACTGCCGGAGAGGGAGTTTCGATGCTTTGTACGTGATCATCACCTAGTCGGAATCTCACAACGGGAAGTC ACTACATGCTATCCTTTGATCCTTGCAGAGAGAAGAAGTATAAAAAATCTGATTAGGGAATTCTTCGACAAGAAGGTAATGTTGCAGTTCGAATCAGAGA ATTACACATTTGATGTCTATGTCACCAACGACGGCCGTGTTAAGATTTTGGATTTTAACCCTTGGGGTGCATTTACACTGCCACTGCTATTTACGTGGGA GGAACTCGAGCAAGTTACAGGGGAAGGGCTAGATGATGATGATGGTGTGGAGTTGAGAGTTGTGGAGACTCGGTGTGGAATTCGGCCCGGGTTGAAAACA GCAGTTCCACAGGAGTTCCTCGACGCTGGCCCAGGGAGTGGATGGGAGCAGGTATTGAAGAACGCATTTGAGGAGCAGCAGCAGAACGCACAAGTATCGG ACGATGTTTGA
AA sequence Show only first row Show all	>Lus10027954 pacid=23181199 polypeptide=Lus10027954 locus=Lus10027954.g ID=Lus10027954.BGIv1.0 annot-version=v1.0 MKVVEVNRCQIQEWYPKFKSSSIPTMIHQLPESFIDYLLDSGTLQLPVSVEDEDALPNRVHNPIDEEDYQVTEEGSDDEAEETPPSFPELELKIKKSILA LEGEVLPKLNWSAPKDSAWISVSRTLRCTSFSEIALLLKSSDSLVHDLSHAYDSCCDKLSSRPSNFHLALRKWYSLLLPEREFRCFVRDHHLVGISQREV TTCYPLILAERRSIKNLIREFFDKKVMLQFESENYTFDVYVTNDGRVKILDFNPWGAFTLPLLFTWEELEQVTGEGLDDDDGVELRVVETRCGIRPGLKT AVPQEFLDAGPGSGWEQVLKNAFEEQQQNAQVSDDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027954 [exp]	0	1
AT2G16860			GCIP-interacting family protei...		Lus10027464 [exp]	5.5	0.9113
AT5G54850			unknown protein		Lus10011150 [exp]	6.0	0.9128
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	10.8	0.9111
AT1G27900			RNA helicase family protein (....		Lus10015812 [exp]	11.0	0.9024
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10033533 [exp]	11.0	0.9073
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	12.2	0.9116
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Lus10015782 [exp]	15.0	0.8944
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10037417 [exp]	16.0	0.9000
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10033000 [exp]	18.5	0.9014
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	21.2	0.9052

Compare expression of checked genes

Lus10027954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.