Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05440 112 / 6e-31 EDA35 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027954 [exp] 190 / 3e-61 AT4G05440 419 / 1e-147 embryo sac development arrest 35, temperature sensing protein-related (.1.2) Lus10000812 [exp] 170 / 4e-56 AT4G05440 133 / 7e-39 embryo sac development arrest 35, temperature sensing protein-related (.1.2) Lus10006898 [exp] 170 / 1e-53 AT4G05440 418 / 4e-147 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G112300 [exp] 136 / 2e-40 AT4G05440 390 / 3e-136 embryo sac development arrest 35, temperature sensing protein-related (.1.2) Potri.017G048600 [exp] 129 / 2e-37 AT4G05440 404 / 6e-141 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF07065 [flax] [poplar] D123 D123
Representative CDS sequence Show only first row Show all	>Lus10027955 pacid=23181187 polypeptide=Lus10027955 locus=Lus10027955.g ID=Lus10027955.BGIv1.0 annot-version=v1.0 ATGTTGCAGTTCGAATCAGAGAATTACACATTTGATGTCTATGTCACCAACGACGGCCGTGTTAAGATTTTGGATTTTAACCCTTGGGGTGCATTTACAC TGCCACTGCTATTTACGTGGGAGGAACTCGAGCAAGTTACAGGGGAAGGGCTAGATGATGATGATGGTGTGGAGTTGAGAGTTGTGGAGACTCGGTGTGG AATTCGGCCCGGGTTGAAAACAGCAGTTCCACAGGAGTTCCTGGATGTTGGCCCAGGGAGTGGATGGGAGCAGGTCTTGAAGAACGCATTTGAGGAGCAG CAGCAGAACGCACAAGTATCGGACGATGTTTGA
AA sequence Show only first row Show all	>Lus10027955 pacid=23181187 polypeptide=Lus10027955 locus=Lus10027955.g ID=Lus10027955.BGIv1.0 annot-version=v1.0 MLQFESENYTFDVYVTNDGRVKILDFNPWGAFTLPLLFTWEELEQVTGEGLDDDDGVELRVVETRCGIRPGLKTAVPQEFLDVGPGSGWEQVLKNAFEEQ QQNAQVSDDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027955 [exp]	0	1
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10013287 [exp]	2.4	0.9448
AT2G37480			unknown protein		Lus10023755 [exp]	2.8	0.9309
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Lus10037356 [exp]	3.6	0.9136
AT3G18620			DHHC-type zinc finger family p...		Lus10040971 [exp]	4.6	0.9241
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10032525 [exp]	6.0	0.9277
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10004563 [exp]	6.0	0.9213
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	7.2	0.9337
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10007757 [exp]	7.4	0.9293
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10009238 [exp]	7.7	0.8751
AT3G18620			DHHC-type zinc finger family p...		Lus10013426 [exp]	7.9	0.9310

Compare expression of checked genes

Lus10027955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.