Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04450 97 / 3e-22 GARP Homeodomain-like superfamily protein (.1.2) AT4G28610 97 / 5e-22 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT5G29000 96 / 7e-22 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT2G01060 75 / 3e-15 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G06800 70 / 4e-13 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G20400 70 / 7e-13 GARP myb-like HTH transcriptional regulator family protein (.1) AT3G13040 67 / 5e-12 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G13640 65 / 2e-11 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 63 / 7e-11 GARP Homeodomain-like superfamily protein (.1.2) AT1G69580 63 / 7e-11 GARP Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008197 [exp] 377 / 9e-129 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10029607 [exp] 156 / 4e-43 AT5G29000 279 / 2e-89 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10022885 [exp] 147 / 7e-40 AT4G28610 299 / 2e-97 phosphate starvation response 1 (.1) Lus10032778 [exp] 132 / 2e-34 AT5G29000 272 / 2e-87 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10022886 [exp] 99 / 2e-22 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10024938 [exp] 98 / 5e-22 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10039124 [exp] 69 / 9e-13 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10007132 [exp] 67 / 4e-12 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10016676 [exp] 67 / 4e-12 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048000 [exp] 253 / 2e-80 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.002G257800 [exp] 207 / 5e-62 AT4G28610 332 / 6e-110 phosphate starvation response 1 (.1) Potri.019G020900 [exp] 162 / 8e-46 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.006G191000 [exp] 77 / 2e-15 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 77 / 3e-15 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 76 / 6e-15 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 75 / 2e-14 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 72 / 2e-13 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 71 / 2e-13 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G314800 [exp] 68 / 2e-12 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027958 pacid=23181183 polypeptide=Lus10027958 locus=Lus10027958.g ID=Lus10027958.BGIv1.0 annot-version=v1.0 ATGTCATCATCGTTCCCGATTCTTCATGCTCCTGCTGGAGAGAAGTACCCCAAATTTCCAGACACTTGCCAGTTTTCTGCTGAGCGTGAGATAATGAGAA ACTCTGCACCTCAACAGGCAGTTCCAGTGGGGTCTGGCAGCGGGGCTGTTGGGCCGATTTTATCTTCGGCTTCTGGATTCGTGAATGAAATGCATGTTTC TTCAGTTTCGCCGCAGGGAAAACATTCTCGGAACTCTCCATTTATTTCTGAATCATCCAGTGCCAGAGGAAGTTTGCCGCCATTGCTTTCGTCCCATGCA GAAGTACAATCCTCATTGTTGGTTAGTCACTCTGAAGAGAGTAAGAAGATTGGTTGGTCCACCGATTCACTTCCTGACTTCCTTGATGATTTTCCGGAAA ATGTCTCCATTCAGAATGGTCAGGAGGAAAGTACAGGGGTCATTGCGTCGGAGGAACATGTGAAGAGACTTGACTGGCAGTGGGCGGATCAGTGGATTTC AGTAGATGATAACCTGGATACGGACTGGAATGAAATTCTTAGTGAAGTTAATGCCACAGAGTCCAAACAAAAGGAAAACATAACCAAGCATATGCCAATG CCACAAACAAGTTCTACTAACTCGGTACCGCAATCTTCAGCACAACCTGCTCAAGCCACACATAGTGGAGAAAAGTACAGAACAGCCAGATACAAACCAG AGCCATCTGAAGAATCTTCAGAGAAAAAGTTGACTTCTATTGACGACATGAAATCTCTCGACTTGAAAACGAGCATGGGGATAACTGACGCTTTAAGAAT GCAAATGGAAGTTCAGAAGCAACTACATGAACAACTTGAGATTCAGCGAAACTTACAGCTGAGAATAGAGGAACAAGGGAGGTATCTGCAGAAGATGTTT GAGAAACAAAAGAAGATGGAAGAAGAAAGATCCAAGCGTCCTTCCTCCTCGTCCCCCGACAATGATCAAAAGTCGAGCGATAAATTACAAGCCACAGATG TCGATGGAACCAAAAGTCAAGCAAGCGAGACCAGCAGTGCAGATAAAAACAACAAGGATACTACTCTCGATGATCTCGAGTCAAGTCCAACGCAGGCGAA ACGACCAAGGACAGATCGGACATCGCCGCGAGCAGTATAG
AA sequence Show only first row Show all	>Lus10027958 pacid=23181183 polypeptide=Lus10027958 locus=Lus10027958.g ID=Lus10027958.BGIv1.0 annot-version=v1.0 MSSSFPILHAPAGEKYPKFPDTCQFSAEREIMRNSAPQQAVPVGSGSGAVGPILSSASGFVNEMHVSSVSPQGKHSRNSPFISESSSARGSLPPLLSSHA EVQSSLLVSHSEESKKIGWSTDSLPDFLDDFPENVSIQNGQEESTGVIASEEHVKRLDWQWADQWISVDDNLDTDWNEILSEVNATESKQKENITKHMPM PQTSSTNSVPQSSAQPAQATHSGEKYRTARYKPEPSEESSEKKLTSIDDMKSLDLKTSMGITDALRMQMEVQKQLHEQLEIQRNLQLRIEEQGRYLQKMF EKQKKMEEERSKRPSSSSPDNDQKSSDKLQATDVDGTKSQASETSSADKNNKDTTLDDLESSPTQAKRPRTDRTSPRAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10027958 [exp]	0	1
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10029817 [exp]	2.2	0.8844
AT1G23230			unknown protein		Lus10035997 [exp]	6.7	0.8628
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	11.7	0.8248
AT5G25270			Ubiquitin-like superfamily pro...		Lus10040001 [exp]	13.9	0.8670
AT1G01770			unknown protein		Lus10036349 [exp]	14.5	0.8139
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031320 [exp]	15.7	0.7961
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	16.1	0.8181
AT1G20670			DNA-binding bromodomain-contai...		Lus10001391 [exp]	17.1	0.8467
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	22.8	0.8158
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	27.2	0.8269

Compare expression of checked genes

Lus10027958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.