Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28910 674 / 0 unknown protein AT5G28960 648 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008196 [exp] 1088 / 0 AT5G28910 695 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047600 [exp] 829 / 0 AT5G28910 668 / 0.0 unknown protein Potri.019G019800 [exp] 824 / 0 AT5G28910 680 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027959 pacid=23181235 polypeptide=Lus10027959 locus=Lus10027959.g ID=Lus10027959.BGIv1.0 annot-version=v1.0 ATGGTGGAAGTGAAGGAGAAGTCAATAGAGAGAGTGGTGTCACAGAAGGCAATGGAGATGGGGAGTTCATTCCCATGTCAAATCTGTGTGGTGGGATTCC TTTGTGGAGTTTGCCTTACTTCTCTGTTCCTTGCTGCTTTTACTTCCTTTGGCAGCTTTGGGTTTGGCTCTTCTTCTTCTGCTGCTACTTCTTTCTCTGC ACTTCCAGTCTCCACTAATTCCTCTTCTCAGTTCATCAATATGGTTACAGCAAGCACAGAAGACTGCAAATTCCAGCTGAAAGGTACAGAGAAATTAGCC GATTCGAGACAAGGAAGCGAAAGGGACGACGAACGAGTTTCACAACTATACTCAGCTTGGAGCTCATTACTAAGTGAGGAAAGTAAACCCACAGTAGTAC CAAATGCACCTCATTTCCAGAACTGCAAGTCAACTGCACAGCTGAACTGGCACCTCGATAATCGTGTGGCTGACGAGAACTATCCACCGTGGACAACTTG GAAGGGACAGCTGGACATGTTCTCTGGATCAGCCAAGACCAGCAGCTTCAGGCATCAGTCTATATCCGAAGGTGCATATCCTCCTTGGATCAGTGGATCA GATGAAGATAACTACCCTCTTACGCGACGAGTCCAGCGCGATATTTGGATGCATCAGCATCCGAAGAACTGCAAGGAGGACCCGAATGTTAAGTTTCTGG TTGCGGACTGGGAGAGGCTCCCTGGGTTCGGGATTGGAGCTCAGTTTGCAGGAATGTGTGGACTTCTCGCCATTGCGATGAACGAGAAGCGTGTACTCGT TACGAGCTACTACAATCGCGCTGATCATGATGGTTGTGAGGGCTCTTCGCGGGGTAGCTGGTCTTGCTATTTCTTTCCGGAGACATCACAAGAGTGTAGA GATAGAGCAGTTGAGCTTATGGCTGATAAAGAAGCTTGGGAGAAGGGAGTCATTACTTCAAAGGAAAGCTATAAATCCAAGGAAATATGGACTGGAAGAA CTCCAAGGCAAGTTATTTACAAGATTCTTGTATGGGGTGAGCCCTGGAGTTATCTACAGCCAACAACTGAAATCAATGGCAGTTTCGTTGCTGGCCACCG CAAGATGGATCGTCGATGGTGGAGAGCACAGGCCATCCGTTACTTAATGAGGTTCCAAACGGAATACACTTGCCGGTTGATGAACTCTGCTCGCCACACT GCATTCGGCGAGGAAGCTGCAAAGATGGTAGTCAGCAACCTTGGTGAACAATGGGACCAAAAGGATCAAGCAAGTGACAGGAAATTGGGGGAGATGGAAG AGTACGTATGGTCAAATCACAAACCATGGATCCCTAGGCCATTACTGAGCATGCATGTGAGAATGGGAGACAAAGCTTGTGAAATGAAACTCGTAGAATT CGATGGCTATATTCGACTTGCTGACCGGATCAGGACACGCTTCCCGAATCTTAATAAGGTCTGGCTATCAACAGAGATGCAGGACGTGATTGAGAAAACA AAGCAGTACGAGAAGTGGAAGTTCTACTACACTAATGTGACGCGGCAGATAGGGAACATGACGATGGCGGCGTATGAGGCAAGTCTAGGGAGGGAGACGA GCACGAATTACCCGCTGGTGAATTTCCTGATGGCAACCGAGGCCGATTTCTTTGTCGGAGCACTGGGTTCGACGTGGTGTTTCCTGATCGACGGGATGAG GAACACTGGTGGGAAAGTTATGGCCGGATACTTGAGCGTCAACAAAGATCGGTTCTGGTAG
AA sequence Show only first row Show all	>Lus10027959 pacid=23181235 polypeptide=Lus10027959 locus=Lus10027959.g ID=Lus10027959.BGIv1.0 annot-version=v1.0 MVEVKEKSIERVVSQKAMEMGSSFPCQICVVGFLCGVCLTSLFLAAFTSFGSFGFGSSSSAATSFSALPVSTNSSSQFINMVTASTEDCKFQLKGTEKLA DSRQGSERDDERVSQLYSAWSSLLSEESKPTVVPNAPHFQNCKSTAQLNWHLDNRVADENYPPWTTWKGQLDMFSGSAKTSSFRHQSISEGAYPPWISGS DEDNYPLTRRVQRDIWMHQHPKNCKEDPNVKFLVADWERLPGFGIGAQFAGMCGLLAIAMNEKRVLVTSYYNRADHDGCEGSSRGSWSCYFFPETSQECR DRAVELMADKEAWEKGVITSKESYKSKEIWTGRTPRQVIYKILVWGEPWSYLQPTTEINGSFVAGHRKMDRRWWRAQAIRYLMRFQTEYTCRLMNSARHT AFGEEAAKMVVSNLGEQWDQKDQASDRKLGEMEEYVWSNHKPWIPRPLLSMHVRMGDKACEMKLVEFDGYIRLADRIRTRFPNLNKVWLSTEMQDVIEKT KQYEKWKFYYTNVTRQIGNMTMAAYEASLGRETSTNYPLVNFLMATEADFFVGALGSTWCFLIDGMRNTGGKVMAGYLSVNKDRFW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28910			unknown protein		Lus10027959 [exp]	0	1
AT3G44670			Disease resistance protein (TI...		Lus10015465 [exp]	5.1	0.7639
AT5G19151			unknown protein		Lus10034040 [exp]	6.3	0.7333
AT3G12350			F-box family protein (.1.2)		Lus10010607 [exp]	11.5	0.7438
AT2G33390			unknown protein		Lus10011781 [exp]	15.7	0.7381
AT2G42190			unknown protein		Lus10031232 [exp]	21.6	0.7605
AT5G57910			unknown protein		Lus10036591 [exp]	28.4	0.7365
AT1G75860			unknown protein		Lus10034539 [exp]	33.8	0.7437
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10026650 [exp]	33.9	0.7031
AT1G07980	CCAAT	NF-YC10	"nuclear factor Y, subunit C10...		Lus10036110 [exp]	36.8	0.6890
AT5G57910			unknown protein		Lus10035808 [exp]	37.7	0.7305

Compare expression of checked genes

Lus10027959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.