Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04470 356 / 1e-117 Ankyrin repeat family protein (.1) AT1G04780 253 / 1e-77 Ankyrin repeat family protein (.1) AT3G24210 215 / 8e-64 Ankyrin repeat family protein (.1) AT1G11740 124 / 1e-30 ankyrin repeat family protein (.1) AT1G62050 114 / 2e-27 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008195 [exp] 595 / 0 AT3G04470 878 / 0.0 Ankyrin repeat family protein (.1) Lus10029612 [exp] 467 / 1e-159 AT3G04470 857 / 0.0 Ankyrin repeat family protein (.1) Lus10032775 [exp] 315 / 5e-102 AT3G04470 698 / 0.0 Ankyrin repeat family protein (.1) Lus10011743 [exp] 247 / 1e-75 AT1G04780 852 / 0.0 Ankyrin repeat family protein (.1) Lus10000752 [exp] 251 / 4e-74 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10003524 [exp] 125 / 1e-31 AT1G62050 531 / 0.0 Ankyrin repeat family protein (.1) Lus10002942 [exp] 125 / 3e-31 AT1G62050 707 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019700 [exp] 474 / 2e-163 AT3G04470 883 / 0.0 Ankyrin repeat family protein (.1) Potri.013G047500 [exp] 464 / 2e-159 AT3G04470 881 / 0.0 Ankyrin repeat family protein (.1) Potri.003G177000 [exp] 271 / 7e-85 AT1G04780 862 / 0.0 Ankyrin repeat family protein (.1) Potri.001G051400 [exp] 270 / 2e-84 AT1G04780 907 / 0.0 Ankyrin repeat family protein (.1) Potri.004G013500 [exp] 180 / 7e-51 AT1G62050 558 / 0.0 Ankyrin repeat family protein (.1) Potri.011G004500 [exp] 122 / 3e-30 AT1G62050 588 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11904 [flax] [poplar] GPCR_chapero_1 GPCR-chaperone
Representative CDS sequence Show only first row Show all	>Lus10027960 pacid=23181257 polypeptide=Lus10027960 locus=Lus10027960.g ID=Lus10027960.BGIv1.0 annot-version=v1.0 ATGTCTCAAACTAATATGTATAGACCTGGGATTGATGTGACTCAGGCGGAACTGATTCCTCATCTGAATTGGAGACGACAGGAGAAGACTGAAATTGTTG GCAACTGGAAGGCGAAGGTATATGATATGCTTAATGTAATGGTAAGTGTGAAGTCAAGACGGGTTCCTGGTGCTATGACTGATGAGGAACTTTTTGCTGA AGATGATGCTGAAAGATTAGCGAACGGAGCGGATCAGGATGAATTTGGTGATGTATTGACACCTGAAGAGAGAAAACAGTTAGACTCTGCGCTTCGTACA GGAAACTCGGATGGTCTTTCAGAGGCAGAAGAAGTTGGGGTGCTCGAGTCCAAAGAGAACAATTCAGGAGCTCCATATGACAATGGTGAGCTGAATGGTG CCACCAAGGAGAAAAAGAGCTGGTTTGCTTGGAAAAATAAAGGTGCCTCTGAAGATCCTAAAAAAGGGAAAAAGTATTCTAAGTTGATACCTGAAGGTGG TGGCGAGCAGAAATCAATTGATCACCAAGAATCATCGTCCGAGTCTGGTTGGGAAGATACGGTGGATGGGAAGAAGGGAAAGGATAAAAATGGCAAGAAG AAGAAGAAGAAAGGGCCAGCCAGTGAGTCGAAGACCGAAAGCGAGTATAAAAAGGGTTTGAGACCTGTATTGTGGCTGACTCCAGATTTTCCATTGCAAA CAGAGGAGCTACTGCCTCTGCTTGACATATTGGCTAACAAGGTCAAAGCTATCAGGAGACTTAGGGAGCTTTTGACTACTAAACTACCCTCTGGCACGTT TCCTGTCAAGGTTGCCATCCCTATTGTTCCAACTGTAAGGGTGATTGTCACATTCACCAAGTTCGAGGATCTTTGTCCAGTTGAGGAGTTCTCAACACCT CTTTCCAGCCCAACACATTTCCAAGACGCCAAGTCCAGGGAACTCGATGGGGGGTCAACAACGTCGTGGATGTCGTGGATGAAAGGAAGCCGAGGTGGGC AATCAAGCGATAGTAGCGACAGCCACCGGTACAAGGATGAGGTCGACCCGTTCCATATACCGTCAGATTATATGTGGGTCGACATCAATGAGAAGAAAAG GCGGATGAAAGCTAAGAGAGCCAAGTCCAAGAAAAATAGGAAGCCACAGCAGGGTGCCGGAAGCGGAGGAGGAGATGGCTCGGCACATCATCAAAGCGAA AAGGGTGAACACTAG
AA sequence Show only first row Show all	>Lus10027960 pacid=23181257 polypeptide=Lus10027960 locus=Lus10027960.g ID=Lus10027960.BGIv1.0 annot-version=v1.0 MSQTNMYRPGIDVTQAELIPHLNWRRQEKTEIVGNWKAKVYDMLNVMVSVKSRRVPGAMTDEELFAEDDAERLANGADQDEFGDVLTPEERKQLDSALRT GNSDGLSEAEEVGVLESKENNSGAPYDNGELNGATKEKKSWFAWKNKGASEDPKKGKKYSKLIPEGGGEQKSIDHQESSSESGWEDTVDGKKGKDKNGKK KKKKGPASESKTESEYKKGLRPVLWLTPDFPLQTEELLPLLDILANKVKAIRRLRELLTTKLPSGTFPVKVAIPIVPTVRVIVTFTKFEDLCPVEEFSTP LSSPTHFQDAKSRELDGGSTTSWMSWMKGSRGGQSSDSSDSHRYKDEVDPFHIPSDYMWVDINEKKRRMKAKRAKSKKNRKPQQGAGSGGGDGSAHHQSE KGEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04470			Ankyrin repeat family protein ...		Lus10027960 [exp]	0	1
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10005067 [exp]	8.1	0.7908
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10015032 [exp]	8.7	0.8232
AT5G43100			Eukaryotic aspartyl protease f...		Lus10024792 [exp]	9.7	0.7700
AT2G01680			Ankyrin repeat family protein ...		Lus10034579 [exp]	11.1	0.7965
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10038907 [exp]	26.5	0.7646
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10027840 [exp]	27.7	0.7540
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031152 [exp]	29.3	0.7661
					Lus10033310 [exp]	29.8	0.7855
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10003061 [exp]	29.9	0.7664
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10037759 [exp]	32.5	0.7630

Compare expression of checked genes

Lus10027960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.