Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04470 410 / 2e-141 Ankyrin repeat family protein (.1) AT1G04780 327 / 7e-109 Ankyrin repeat family protein (.1) AT3G24210 316 / 5e-105 Ankyrin repeat family protein (.1) AT1G62050 266 / 2e-85 Ankyrin repeat family protein (.1) AT1G11740 249 / 5e-79 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008195 [exp] 456 / 5e-159 AT3G04470 878 / 0.0 Ankyrin repeat family protein (.1) Lus10032775 [exp] 415 / 8e-144 AT3G04470 698 / 0.0 Ankyrin repeat family protein (.1) Lus10029612 [exp] 395 / 2e-134 AT3G04470 857 / 0.0 Ankyrin repeat family protein (.1) Lus10011743 [exp] 340 / 3e-114 AT1G04780 852 / 0.0 Ankyrin repeat family protein (.1) Lus10000752 [exp] 336 / 9e-108 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10002942 [exp] 241 / 2e-76 AT1G62050 707 / 0.0 Ankyrin repeat family protein (.1) Lus10003524 [exp] 123 / 1e-32 AT1G62050 531 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019700 [exp] 410 / 3e-141 AT3G04470 883 / 0.0 Ankyrin repeat family protein (.1) Potri.013G047500 [exp] 407 / 5e-140 AT3G04470 881 / 0.0 Ankyrin repeat family protein (.1) Potri.001G051400 [exp] 337 / 7e-113 AT1G04780 907 / 0.0 Ankyrin repeat family protein (.1) Potri.003G177000 [exp] 323 / 2e-107 AT1G04780 862 / 0.0 Ankyrin repeat family protein (.1) Potri.011G004500 [exp] 243 / 6e-77 AT1G62050 588 / 0.0 Ankyrin repeat family protein (.1) Potri.004G013500 [exp] 241 / 4e-76 AT1G62050 558 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11904 [flax] [poplar] GPCR_chapero_1 GPCR-chaperone
Representative CDS sequence Show only first row Show all	>Lus10027961 pacid=23181181 polypeptide=Lus10027961 locus=Lus10027961.g ID=Lus10027961.BGIv1.0 annot-version=v1.0 ATGGAAGACTATTCAAAGTATTCTCACAGTCCTGCTCACTTGGCGGTTGCACGCCGCGATTATGCTACTCTGAGACGAATTATTGCCAACCTTCCACGCC TTGCCAGAGCTGGAGATGTTGCTACTGAGGAACAGTCTATTACTGCCGAAAAAGAAGCCGATGCTCTCTCGAGCATTATAGATCGAAGGGATGTTCCTGG CCGAGAGACGCCTCTTCACCTTGCTGTCAAGTTTAGGGACCCGATATCGGCAGAGATCTTGATGGAAGCCGGTGCGGATTGGAGTCTGCAGAATGAGAAC GGGTGGAGTGCTCTTCAGGAAGCAGTTTGCACAAGGGAGGAGGCTATTGCCATGATAATTGCTCGTCACTATCAGCCGCTAGCATGGGCAAAATGGTGCC GTAGACTTCCACGTGTCGTTGCTTCGGCTGCTCGTATTCGTGATTTCTACATGGAGATTACTTTCCATTTCGAGAGTTCTGTTATCCCATTCATTGGCCG TATTGCACCCTCTGATACTTATCGTATATGGAAGCGCGGTGCTAATCTTCGCGCCGATATGACGCTCGCTGGGTTTGATGGGTTCCGGATTCAGAGATCG GATCAGACGTTCTTGTTTTTGGGGGATGGTTATTCGGCAGAGGATGGAGGAGGCACATCTTTATCGCCGGGTTTTATTTGGCAGAGGATGGAGGAGGCAC ATCTTTATCGCCGGGTTCTTTGA
AA sequence Show only first row Show all	>Lus10027961 pacid=23181181 polypeptide=Lus10027961 locus=Lus10027961.g ID=Lus10027961.BGIv1.0 annot-version=v1.0 MEDYSKYSHSPAHLAVARRDYATLRRIIANLPRLARAGDVATEEQSITAEKEADALSSIIDRRDVPGRETPLHLAVKFRDPISAEILMEAGADWSLQNEN GWSALQEAVCTREEAIAMIIARHYQPLAWAKWCRRLPRVVASAARIRDFYMEITFHFESSVIPFIGRIAPSDTYRIWKRGANLRADMTLAGFDGFRIQRS DQTFLFLGDGYSAEDGGGTSLSPGFIWQRMEEAHLYRRVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04470			Ankyrin repeat family protein ...		Lus10027961 [exp]	0	1
AT5G47900			Protein of unknown function (D...		Lus10014112 [exp]	4.7	0.8589
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Lus10000065 [exp]	5.5	0.8511
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009460 [exp]	6.5	0.8614
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	6.6	0.8477
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10025955 [exp]	7.1	0.8402
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	8.4	0.8346
AT4G24200			Transcription elongation facto...		Lus10033586 [exp]	9.1	0.7957
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	12.7	0.8316
AT2G20010			Protein of unknown function (D...		Lus10012970 [exp]	16.0	0.8342
					Lus10037878 [exp]	16.6	0.8280

Compare expression of checked genes

Lus10027961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.