Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04480 809 / 0 endoribonucleases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008194 [exp] 1295 / 0 AT3G04480 861 / 0.0 endoribonucleases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047400 [exp] 949 / 0 AT3G04480 944 / 0.0 endoribonucleases (.1) Potri.019G019600 [exp] 929 / 0 AT3G04480 941 / 0.0 endoribonucleases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0534 [flax] [poplar] YjgF-like PF01042 [flax] [poplar] Ribonuc_L-PSP Endoribonuclease L-PSP CL0039 [flax] [poplar] HUP PF01902 [flax] [poplar] Diphthami_syn_2 Diphthamide synthase
Representative CDS sequence Show only first row Show all	>Lus10027962 pacid=23181113 polypeptide=Lus10027962 locus=Lus10027962.g ID=Lus10027962.BGIv1.0 annot-version=v1.0 ATGAAGGTGGTGGCGTTGGTTAGCGGCGGAAAGGACAGCTGCTACGCCATGATGAAGTGCATCCAATACGGCCACGAGATCGTGGCGTTAGCCAATTTGA TGCCGGCTGATGAATCCGTCGACGAGCTGGATAGCTACATGTATCAAACCGTTGGTCACCAAATAGTAGTCAGCTACGCAGAATGCATAGGGGTGCCATT GTTCAGGAGGCAAATAAAAGGATCTTCAAGGCAAGTCAGTTTCAGTGAGGTGGATGGAGAATTTGGGCATCAGAAGCTGAACTACAAGATGACACATGGC GATGAGGTCGAAGATATGTTCGTCTTGTTGAAGGAGGTCAAGAGGCAGATACCTTCTGTGACTGCTGTATCTTCTGGTGCTATTGCATCAGATTACCAGA GGCTACGAGTAGAAAGTATTTGTTCAAGGTTAGGGCTTGTTTCTCTAGCATATTTATGGAAGCAAGATCAGTCATTGCTCCTTGATGAAATGATAGCAAA CGAGATCGTGGCCATCACTGTGAAGGTGGCAGCAATGGGGTTGGTTCCTGGAAAGCATTTGGAAGGGGGTGAATACGAGACTCTGACGCTTGACTGCCCA CTCTTTGTTAATGCCAGAATTGTGCTGGACAAATCCCAGATATTGTTACACTCTCCGGATTCCATTGCTCCAGTTGGGATTCTCCATCCTTCAAAATTTC ATTTGGAGAGGAAGGGAGAGTCTGTATGTGGCAACGATAGTACCCCCGAATCCCATCAGAAAGGAGGTAGTGTTATTGAGGTGCAGGGAGACTTCCCAGA AGAAAGCGAGCCTATTTGCCGGCCTGTTGGCAGCGGAACTATTTCAGTTGAGCATTTAGACGACCGACTTTGCATCTCCAGGACATTTACGGATAATACC TTTTCTATTTCTTGCTGGTTGCAAGATTCATCCAGAACTTCTCCAGGTCTAAAGGAAGATTTGAGCACCATTCTTAAGCGCATTGAATCACAGCTTGCAG TGTATGGCTTTGGCTGGGGGCATGTCCTATACATCCATCTCTATATTGCTGATATGAATGAATTTGCTAGTGCAAATGAGACATATGTGGCATTTATTAC ACAGGAGAAGTGTCCTAATGGAGTTCCATCCCGCAGCACAATTGAACTTCCTTTGGTGCAAGCTGCCTTGGGGAAAGCCTACGTCGAAGTTCTGGTGGCG AACGACAATAGTAAAAATGTGTTACATGTTCAAAGTATCTCCTCCTGGGCACCTAGTTGCATTGGACCATATAGCCAGGCAACTTTGCACCATGAGATAC TTTATATGGCTGGGCAACTGGGTCTTCACCCACCTACGATGACTCTCTGCAACGGTGGTGCTACTGCTGAGCTGGAACTAGCACTACAAAACAGTGAAGC AGTGGCAAAAAGCTTCAACTGTTCGATTTCCACCACTGCAACCTCATTTACAGTCTATTGCTCGAATCGTGTTCCAACATCAGAGAGACAAGCGGTCGAA GATAAACAAAGATCTCTTCTTCGAGAAACGAGACTGCTCCAACTAGACCAAGGAAGCAAGTGCAAAGTTGTTGATCCTGTAGTCTTGTACGTCCTTGTGC CTGATCTTCCAAAAAGAGCATTGGTAGAAGTAAAACCCACACTCTTTGTTCCGGATTTGGACACCGATATCCCGGAGGTCGATGCTGGAAGCACGTCCTC CTGCATAGTTCCCAAGAGTTGGGGATTTGAGCGAGCAGACTGGCACGAAGCTTGCATTCAGAAATGTGTCATTAGTGGGAAGATATGCACACTTCTTTTA TCCATAACAAGAGACCTCGTCGCCAAGATATGTTCCAAGACTCTCGAAAAGAACGATCTTCTCACGAATGACCATCTGAAACGAGTTCTGCAGTTCTGTA TCTACCTTCTGGATCAAGTGGTTACTGACAACTGTTTCACCTGGGAAGACATAATGAGCCTGAGACTGTATTTCCCGACCAGCTTCGGCTTGAAATCGGA GGCTCTGTCTGTCATGTTCGGAGATGTATTTGCTGAGACTGGCGCCTGCAGCACGGGCAGTGAGCACTTGCTCAACGTAGTTCCAGTGTTAAGCGTTGGC AGATCAGCAGCAGCCATGGAGGATTTGCTTGTGTTTGAGTTATTGGCTCGGAAATCATAA
AA sequence Show only first row Show all	>Lus10027962 pacid=23181113 polypeptide=Lus10027962 locus=Lus10027962.g ID=Lus10027962.BGIv1.0 annot-version=v1.0 MKVVALVSGGKDSCYAMMKCIQYGHEIVALANLMPADESVDELDSYMYQTVGHQIVVSYAECIGVPLFRRQIKGSSRQVSFSEVDGEFGHQKLNYKMTHG DEVEDMFVLLKEVKRQIPSVTAVSSGAIASDYQRLRVESICSRLGLVSLAYLWKQDQSLLLDEMIANEIVAITVKVAAMGLVPGKHLEGGEYETLTLDCP LFVNARIVLDKSQILLHSPDSIAPVGILHPSKFHLERKGESVCGNDSTPESHQKGGSVIEVQGDFPEESEPICRPVGSGTISVEHLDDRLCISRTFTDNT FSISCWLQDSSRTSPGLKEDLSTILKRIESQLAVYGFGWGHVLYIHLYIADMNEFASANETYVAFITQEKCPNGVPSRSTIELPLVQAALGKAYVEVLVA NDNSKNVLHVQSISSWAPSCIGPYSQATLHHEILYMAGQLGLHPPTMTLCNGGATAELELALQNSEAVAKSFNCSISTTATSFTVYCSNRVPTSERQAVE DKQRSLLRETRLLQLDQGSKCKVVDPVVLYVLVPDLPKRALVEVKPTLFVPDLDTDIPEVDAGSTSSCIVPKSWGFERADWHEACIQKCVISGKICTLLL SITRDLVAKICSKTLEKNDLLTNDHLKRVLQFCIYLLDQVVTDNCFTWEDIMSLRLYFPTSFGLKSEALSVMFGDVFAETGACSTGSEHLLNVVPVLSVG RSAAAMEDLLVFELLARKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04480			endoribonucleases (.1)		Lus10027962 [exp]	0	1
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10004503 [exp]	3.0	0.8693
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	4.7	0.8586
AT1G69550			disease resistance protein (TI...		Lus10040368 [exp]	7.7	0.7835
AT4G11670			Protein of unknown function (D...		Lus10029581 [exp]	8.4	0.8364
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	14.5	0.8269
AT4G24020		NLP7	NIN like protein 7 (.1)		Lus10023049 [exp]	15.1	0.7376
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	16.8	0.8491
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10043299 [exp]	21.0	0.7740
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10036237 [exp]	27.3	0.7451
AT1G65440		GTB1	global transcription factor gr...		Lus10013071 [exp]	28.1	0.7969

Compare expression of checked genes

Lus10027962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.