Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28850 761 / 0 Calcium-binding EF-hand family protein (.1.2) AT5G28900 761 / 0 Calcium-binding EF-hand family protein (.1) AT1G54450 759 / 0 Calcium-binding EF-hand family protein (.1) AT5G44090 748 / 0 Calcium-binding EF-hand family protein (.1) AT1G03960 689 / 0 Calcium-binding EF hand family protein (.1.2) AT5G18580 88 / 3e-18 FASS2, TON2, GDO, FS1, EMB40, FASS GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008193 [exp] 1042 / 0 AT5G28850 768 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10029614 [exp] 964 / 0 AT5G28850 792 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10021174 [exp] 952 / 0 AT5G28850 804 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10032772 [exp] 946 / 0 AT5G28850 778 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10011811 [exp] 944 / 0 AT5G28850 797 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10003628 [exp] 716 / 0 AT5G44090 775 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10008247 [exp] 699 / 0 AT5G44090 774 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10024917 [exp] 678 / 0 AT5G44090 751 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10022907 [exp] 674 / 0 AT5G44090 737 / 0.0 Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019500 [exp] 824 / 0 AT5G28850 885 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.013G047300 [exp] 824 / 0 AT5G28850 887 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.002G035800 [exp] 773 / 0 AT5G44090 814 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.005G227100 [exp] 743 / 0 AT5G44090 772 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.010G022300 [exp] 90 / 5e-19 AT5G18580 835 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.008G215300 [exp] 87 / 7e-18 AT5G18580 830 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027963 pacid=23181191 polypeptide=Lus10027963 locus=Lus10027963.g ID=Lus10027963.BGIv1.0 annot-version=v1.0 ATGGAAGGTGTCGTATCCACCGGCGACGTGGCAGCTTTCAACCCGGACATCCTCCAGCTCCCGGAATTGTCACCCTTGGCCTTGAAAGCTAATCCTTTCC TCGCCGAGCAACTCTTCTCCCAGTGGCTTTCCCTTGCCGATACTTCTAGATTGGTCAAATCCTTGCTCTCTGCAGCTAAGACTGGGGAGCCGTTGAATGC TGTTGGAAATTCTAGCAGTACAAATGGTGGTTGTGGCAGTCCAATACCGTCCATGTTTCCTTCTGGAAGCACTCCTCCGCTTTCGCCTCGTAGTGTCTCT GGTTCACCTCGCCACGTGAAGCCGAGAGCTGGTCTTTCTACTCTAGGTTCGCCACTAAAAGTGATCAATGAGCCGGTGCGAGAAGTCATACCTCAGTTTT ACTTTAAAAATGGCCGGCTGCCTCGAGACGAGACAAGACGGCAATGCTTGTTTCAAATTGATCAACATTATCATACTCATGAGGATGGATTGCAACAAAA TGAGTTTAAGACAGTTTCAAAGGATATATGCAAGCTTCCGTCTTTTTTCTCCACTGTACTGTTTAAAAGAATTGATGTCAACAATGTTGGCATGGTGACA AGGGATCAATTTGTCGACTATTGGCTTAAAGGAAATTTCTTGACCATGGATTTAGCTACTCAAATCTACACGATTCTCAAGCAACCAGATCATGAATACC TTAGTCAGGAGGATTTCAGACCTGTGCTACGAGAAATTTTGGCAACTCATCCAGGCTTGGAATTTTTGCAGAGCACTCCTGAATTCCAAGAGAGATATGC TGAAACGGTCATATACAGAATATTTCACTATGTAAATAGATCTGGAACTGGGCATCTTATCCTCAAGGAGCTAAAGCGTTCTAACTTGATTTCTGCTATG CAACAAGTGGAGGAGGAAGAAGATATTAATAAAGTTTTAAGGTACTTCTCGTATGAGCACTTCTATGTTATATACTGCAAGTTCTGGGAGCTTGACACAG ATCATGATTTCTTTATCGACAAAGAGAACCTTATTCGATATGGAAACCATGCTCTTACCTACAGGATTGTTGATAGAGTATTTTCTCAGGTTGCAAGGAA ATTTAGAAGCAAGGTCGAAGGCAAGATGGGTTATGAAGATTTTGTTTACTTCATACTCTCCGAGGAGGATAAATCTTCTGAACCTGGCATAGAGTTCTGG TTTAATTGCATTGATCTAGATGGAAATGGTATCCTTACTTCCAATGAAATGCAATTCTTTTATGAAGAACAATTGCATCGAATGGAGTGCATGGCCCAAG AGCCGGTCCTGTTTGAAGATATATTGTGCCAGATCATTGATATGATTGGACCAGAGCATGAGGGTCTAGTCACATTGCGTGACATGAGGCGAACCAAGCT TGTCGGGCACGTGTTCAACATTCTTTTCAATCTCAATAAGTTCATTGCCTTTGAAAGCCGGGATCCTTTCCTAATTCGCCAGGCAAGTTTAGATGCCATT CAGTGGGATCGTTTCGCACATAGAGAGTACATAAGGCTCTCGATGGAAGATGACGCAGAAGATGTGTCGAACGGAAGTGGAGACGTATGGGACGAATCAC TCGAGTCTCCCTTCTGA
AA sequence Show only first row Show all	>Lus10027963 pacid=23181191 polypeptide=Lus10027963 locus=Lus10027963.g ID=Lus10027963.BGIv1.0 annot-version=v1.0 MEGVVSTGDVAAFNPDILQLPELSPLALKANPFLAEQLFSQWLSLADTSRLVKSLLSAAKTGEPLNAVGNSSSTNGGCGSPIPSMFPSGSTPPLSPRSVS GSPRHVKPRAGLSTLGSPLKVINEPVREVIPQFYFKNGRLPRDETRRQCLFQIDQHYHTHEDGLQQNEFKTVSKDICKLPSFFSTVLFKRIDVNNVGMVT RDQFVDYWLKGNFLTMDLATQIYTILKQPDHEYLSQEDFRPVLREILATHPGLEFLQSTPEFQERYAETVIYRIFHYVNRSGTGHLILKELKRSNLISAM QQVEEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFFIDKENLIRYGNHALTYRIVDRVFSQVARKFRSKVEGKMGYEDFVYFILSEEDKSSEPGIEFW FNCIDLDGNGILTSNEMQFFYEEQLHRMECMAQEPVLFEDILCQIIDMIGPEHEGLVTLRDMRRTKLVGHVFNILFNLNKFIAFESRDPFLIRQASLDAI QWDRFAHREYIRLSMEDDAEDVSNGSGDVWDESLESPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28850			Calcium-binding EF-hand family...		Lus10027963 [exp]	0	1
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10034240 [exp]	1.4	0.8996
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10021570 [exp]	1.4	0.9235
AT5G45160			Root hair defective 3 GTP-bind...		Lus10038333 [exp]	2.4	0.8700
AT1G03080			kinase interacting (KIP1-like)...		Lus10022079 [exp]	4.0	0.8580
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10009531 [exp]	4.6	0.8353
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10040359 [exp]	4.9	0.8329
AT2G15900			Phox-associated domain;Phox-li...		Lus10012042 [exp]	6.2	0.8230
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028126 [exp]	8.5	0.8175
AT1G31780			unknown protein		Lus10035691 [exp]	13.0	0.8269
AT5G45160			Root hair defective 3 GTP-bind...		Lus10018282 [exp]	14.8	0.8526

Compare expression of checked genes

Lus10027963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.