Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18910 163 / 7e-48 Protein kinase superfamily protein (.1) AT5G35960 161 / 7e-48 Protein kinase family protein (.1) AT3G05140 157 / 9e-46 RBK2 ROP binding protein kinases 2 (.1) AT5G65530 144 / 5e-41 Protein kinase superfamily protein (.1) AT5G10520 140 / 1e-39 RBK1 ROP binding protein kinases 1 (.1) AT2G18890 133 / 2e-38 Protein kinase superfamily protein (.1.2) AT5G57670 123 / 8e-33 Protein kinase superfamily protein (.2) AT1G21590 100 / 2e-24 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 97 / 5e-24 Protein kinase superfamily protein (.1.2.3) AT1G77280 98 / 1e-23 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008192 [exp] 208 / 1e-65 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10025713 [exp] 168 / 3e-50 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10012776 [exp] 168 / 9e-49 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10034000 [exp] 168 / 1e-48 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10041248 [exp] 161 / 4e-46 AT5G18860 362 / 5e-117 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10035949 [exp] 145 / 3e-41 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10012727 [exp] 146 / 7e-41 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10018959 [exp] 137 / 4e-38 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10006957 [exp] 130 / 9e-37 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136300 [exp] 172 / 6e-52 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.010G027301 [exp] 158 / 1e-45 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.013G028100 [exp] 149 / 9e-43 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.007G011700 [exp] 140 / 1e-39 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.018G091200 [exp] 129 / 7e-36 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.006G166600 [exp] 126 / 8e-35 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.006G173700 [exp] 127 / 2e-34 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 124 / 6e-33 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.005G067000 [exp] 98 / 8e-24 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 97 / 1e-23 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10027964 pacid=23181141 polypeptide=Lus10027964 locus=Lus10027964.g ID=Lus10027964.BGIv1.0 annot-version=v1.0 ATGACGGCGGATTTCTTGTCGGAGCTCGGAATCATGGCTCACGTTAAACACCCAAATACCGCCAAATTGATCGGATACTGCGTCGACGGCGGGATGCATC TCGTCCTCCAACTCTCTTCCCGTGGCAGTCTAGCTTCTTCCCTCCACGGTTCGAAGGAGTGTTTGAGCTGGGAGGTTAGGTACAAGATTGCAATGGGGAC CGCAGAAGGGTTAGTGTATCTACATGGAGGATGCCAGAGAAGAATCATCCATAGAGATATCAAAGCTGCCAATATTCTTCTTACAGAAGAATTCGAGCCT CAGGCAAAGCCATTGCTGAAGAAGAGTGATATAAGGGAGCTAGTAGATCCAGCACTCGGGAATGCTTACGACGCAAGGCAGGTTAACCTTATGCTCGGAG CGGCTGCTCTTTGCATTCAGAAATCTGCGATTCGGAGGCCGTTCATGCCTCAGGTGGAGCAAGTGTTGAGAGGGAACGTGAGTTGCTTGAAGTCGACGAA GAAGTGCAAATTGTCATTTTTCAGAAGAGCATTGAGGGAAGAGTTGCTCAAGGCAGAGGAGAACCAACTATCCCAGAGGGCTTCAATTCAACAAGCTTAA
AA sequence Show only first row Show all	>Lus10027964 pacid=23181141 polypeptide=Lus10027964 locus=Lus10027964.g ID=Lus10027964.BGIv1.0 annot-version=v1.0 MTADFLSELGIMAHVKHPNTAKLIGYCVDGGMHLVLQLSSRGSLASSLHGSKECLSWEVRYKIAMGTAEGLVYLHGGCQRRIIHRDIKAANILLTEEFEP QAKPLLKKSDIRELVDPALGNAYDARQVNLMLGAAALCIQKSAIRRPFMPQVEQVLRGNVSCLKSTKKCKLSFFRRALREELLKAEENQLSQRASIQQA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35960			Protein kinase family protein ...		Lus10027964 [exp]	0	1
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10019996 [exp]	2.4	0.8363
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10018488 [exp]	4.4	0.8374
AT1G77580			Plant protein of unknown funct...		Lus10012712 [exp]	9.2	0.8047
AT1G65690			Late embryogenesis abundant (L...		Lus10033705 [exp]	17.4	0.7680
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10037334 [exp]	19.3	0.7549
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	20.1	0.8063
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038178 [exp]	22.4	0.7831
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	23.0	0.7747
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10032517 [exp]	24.2	0.7420
AT1G76140			Prolyl oligopeptidase family p...		Lus10021235 [exp]	24.4	0.7857

Compare expression of checked genes

Lus10027964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.