Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03440 246 / 6e-80 Leucine-rich repeat (LRR) family protein (.1) AT4G03010 240 / 9e-78 RNI-like superfamily protein (.1) AT3G17640 131 / 8e-36 Leucine-rich repeat (LRR) family protein (.1) AT3G59510 84 / 2e-18 Leucine-rich repeat (LRR) family protein (.1) AT2G26330 81 / 3e-17 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT2G15320 80 / 4e-17 Leucine-rich repeat (LRR) family protein (.1) AT3G51740 81 / 6e-17 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT4G22730 79 / 2e-16 Leucine-rich repeat protein kinase family protein (.1) AT2G23950 77 / 7e-16 Leucine-rich repeat protein kinase family protein (.1) AT3G56100 77 / 9e-16 IMK3, MRLK meristematic receptor-like kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029622 [exp] 242 / 2e-78 AT1G03440 534 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10031601 [exp] 181 / 5e-55 AT1G03440 463 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10033744 [exp] 159 / 2e-47 AT4G03010 244 / 3e-84 RNI-like superfamily protein (.1) Lus10042681 [exp] 145 / 6e-42 AT4G03010 205 / 1e-63 RNI-like superfamily protein (.1) Lus10004032 [exp] 90 / 4e-20 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030279 [exp] 86 / 1e-18 AT2G45340 648 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004040 [exp] 79 / 2e-16 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10043368 [exp] 79 / 2e-16 AT3G47570 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019525 [exp] 78 / 4e-16 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136100 [exp] 252 / 4e-82 AT1G03440 541 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.011G023500 [exp] 137 / 7e-38 AT3G17640 350 / 2e-118 Leucine-rich repeat (LRR) family protein (.1) Potri.004G001000 [exp] 133 / 3e-36 AT3G17640 386 / 1e-132 Leucine-rich repeat (LRR) family protein (.1) Potri.014G068700 [exp] 85 / 2e-18 AT2G45340 831 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G125600 [exp] 82 / 1e-17 AT1G79620 448 / 4e-149 Leucine-rich repeat protein kinase family protein (.1) Potri.017G028600 [exp] 80 / 6e-17 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.012G128700 [exp] 79 / 1e-16 AT5G51560 906 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G028400 [exp] 79 / 1e-16 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.001G301400 [exp] 78 / 2e-16 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 78 / 3e-16 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027967 pacid=23181117 polypeptide=Lus10027967 locus=Lus10027967.g ID=Lus10027967.BGIv1.0 annot-version=v1.0 ATGGCGACCTCCTCCTTCTACATTGTACTTATGTTAATGTCACTCTGTTTTTCGGTGGAAGCGATCCTCGACCCGGTTGATTTCCTGGCCTTGCAATCGA TTCGGAAATCAATGGACGACATGCCGGGATCCAACTTCTTCTCCACGTGGGATTTCACCTCCGACCCCTGCAACTTCGCCGGCGTTTACTGTGATTCCGA CCGAGTCATCGCCCTCAATCTGGGCGACCCGAGTGCCGGATCCCCGGGTCTAATCGGCAGGATCGACTCTTCCATCGATAAGCTCACTTCCCTCGCCGAG CTCACAATCGTACCGGGTCGGATCATGGGGTCCATACCCGACACCATCTCGCAGCTCTCCAACCTTCGGCTCCTCGCCGTCAGCCGGAACTTCCTCTCCG GCGATATCCCGGTCTCCCTCGGGCAGCTGTCGAATATCAAAACGCTTGATCTCAGCTACAATCAGCTCACCGGACTCGTCCAGCCGTCGATCGGATCCAT CTCCGGACTATCCAATCTAATCCTCTGCCATAACAAGCTATCCGGGGCGGTCCCGACAATCACTTCCCAAAACATTCACTTCCCAAACTCTGACCCGACT CGATTTGTCTCACAACCAACTCAACGGCACGATTCTTCCTTCTTCATTACCTCCTTCACTTCAGTACCTATCACTTTCCAAGAACCGTCTGGTCGGACCG GTGGATCAGGTTGTGACCCGGTTGGACCAGCTCAACCACCTCGATCTGAGCATGAACCAGTTCTCGGGTTGCATACCGGGTAG
AA sequence Show only first row Show all	>Lus10027967 pacid=23181117 polypeptide=Lus10027967 locus=Lus10027967.g ID=Lus10027967.BGIv1.0 annot-version=v1.0 MATSSFYIVLMLMSLCFSVEAILDPVDFLALQSIRKSMDDMPGSNFFSTWDFTSDPCNFAGVYCDSDRVIALNLGDPSAGSPGLIGRIDSSIDKLTSLAE LTIVPGRIMGSIPDTISQLSNLRLLAVSRNFLSGDIPVSLGQLSNIKTLDLSYNQLTGLVQPSIGSISGLSNLILCHNKLSGAVPTITSQNIHFPNSDPT RFVSQPTQRHDSSFFITSFTSVPITFQEPSGRTGGSGCDPVGPAQPPRSEHEPVLGLHTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10027967 [exp]	0	1
AT2G05790			O-Glycosyl hydrolases family 1...		Lus10015151 [exp]	3.2	0.9122
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10001765 [exp]	6.3	0.9065
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10013124 [exp]	7.2	0.8917
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10032562 [exp]	11.7	0.8842
AT4G28230			unknown protein		Lus10018539 [exp]	13.7	0.9022
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004934 [exp]	16.2	0.8754
AT5G27550			P-loop containing nucleoside t...		Lus10004487 [exp]	17.0	0.9085
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10038729 [exp]	17.7	0.9081
AT4G14330			P-loop containing nucleoside t...		Lus10011804 [exp]	24.1	0.9038
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014235 [exp]	26.9	0.9047

Compare expression of checked genes

Lus10027967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.