Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63010 566 / 0 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 526 / 0 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 507 / 0 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 212 / 3e-66 ATCXE18 carboxyesterase 18 (.1) AT5G16080 151 / 1e-42 ATCXE17 carboxyesterase 17 (.1) AT1G68620 144 / 3e-40 alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 144 / 5e-40 ATCXE20 carboxyesterase 20 (.1) AT5G06570 139 / 2e-38 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48700 125 / 5e-33 ATCXE13 carboxyesterase 13 (.1) AT1G19190 124 / 1e-32 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000928 [exp] 520 / 0 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10002254 [exp] 517 / 0 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10018963 [exp] 338 / 3e-116 AT5G27320 365 / 3e-127 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10008189 [exp] 265 / 8e-90 AT3G63010 206 / 4e-67 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10039162 [exp] 231 / 2e-73 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10013774 [exp] 224 / 2e-70 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10036168 [exp] 159 / 7e-46 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015989 [exp] 159 / 9e-46 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015988 [exp] 157 / 5e-45 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G213100 [exp] 614 / 0 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 602 / 0 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.013G028700 [exp] 535 / 0 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G040600 [exp] 530 / 0 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.019G014302 [exp] 254 / 2e-82 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.001G459400 [exp] 237 / 1e-75 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.004G092500 [exp] 228 / 5e-72 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.001G032400 [exp] 157 / 7e-45 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G113700 [exp] 151 / 9e-43 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.016G065000 [exp] 148 / 8e-42 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10027969 pacid=23181182 polypeptide=Lus10027969 locus=Lus10027969.g ID=Lus10027969.BGIv1.0 annot-version=v1.0 ATGGCTGGAAGTAATGAAGTCAATCTCAATGAATCCAAGAGGGTAGTTCCGTTGAACACATGGGTACTGATTTCCAACTTCAAGCTAGCGTACAACCTCC TCCGCCGTCCGGACGGCTCCTTCAACCGCGACCTGGCTGAGTTTCTCGACCGTAAAGTCCCTGCAAACACAATCCCCGTGGACGGCGTCTTCTCCTTCGA CCACGTCGACCGATCCACCGGTCTCCTCAACCGGGTCTACCGACCCACCCCTGAACTGGACCACAACACCACCACCCAATTATCCCCATCCGTCGCCGCG GTCATCGACCTGGAGAAGCCACTCAGCACGACGACGATCGTCCCAGTAATCGTCTTCTTCCACGGCGGGAGCTTCACCCACTCCTCCGCCAACAGCGCGA TCTACGACTCCTTCTGCCGCCGCCTCGTCTCAATCTGCGGCGCCGTCGTCGTCTCCGTCAACTACCGCCGCTCGCCGGAGCACCGCTACCCATGCGCGTA CGACGACGGGTGGTCAGCTCTCAAATGGGTCAAGTCCAGGTCCTGGCTAAGAAGCGGTAAAGACTCGAAAGTCCACGTCTTTCTCGCCGGAGACAGCTCC GGCGGGAACATCGCCCACCACGTCGCCGTGAGGGCTGCGGAATCCGACATCGAGATTCTGGGGAATATTCTCCTCCACCCGATGTTCGGCGGGCAGGAGA GGACCGAATCGGAAAGGTGCTTAGACGGGAAGTACTTCGTCACGATTCAGGATAGGGATTGGTACTGGAGGGCTTTTTTGCCGGAAGGCGAGGATAGAGA TCATCCAGCCGTTAATATCTTCGGTCCCAGGAGTAAGAAATTGGACGGTGGGATTAAGCTTCCAAAGAGTTTGGTAGTTGTGGCCGGTTTGGACCTGATC CAAGATTGGCAATTGGCTTACGTTGATGGAATGGAGAAAGCAGGGCATCAAGTGAAGCTGATTTTTCTCAAGCAGGCTACAATTGGGTTCTATTTCTTGC CCAATAACCAGCATTTCTACTGCCTTATGGAGGAAATCAAGAACTTCGTTAAACCTTCTAACTGA
AA sequence Show only first row Show all	>Lus10027969 pacid=23181182 polypeptide=Lus10027969 locus=Lus10027969.g ID=Lus10027969.BGIv1.0 annot-version=v1.0 MAGSNEVNLNESKRVVPLNTWVLISNFKLAYNLLRRPDGSFNRDLAEFLDRKVPANTIPVDGVFSFDHVDRSTGLLNRVYRPTPELDHNTTTQLSPSVAA VIDLEKPLSTTTIVPVIVFFHGGSFTHSSANSAIYDSFCRRLVSICGAVVVSVNYRRSPEHRYPCAYDDGWSALKWVKSRSWLRSGKDSKVHVFLAGDSS GGNIAHHVAVRAAESDIEILGNILLHPMFGGQERTESERCLDGKYFVTIQDRDWYWRAFLPEGEDRDHPAVNIFGPRSKKLDGGIKLPKSLVVVAGLDLI QDWQLAYVDGMEKAGHQVKLIFLKQATIGFYFLPNNQHFYCLMEEIKNFVKPSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10027969 [exp]	0	1
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008189 [exp]	1.7	0.9549
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10027638 [exp]	2.0	0.9534
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10032926 [exp]	4.2	0.9403
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10006708 [exp]	4.7	0.9341
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10009944 [exp]	10.6	0.9207
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10004711 [exp]	16.3	0.9158
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10031079 [exp]	16.9	0.9378
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10014350 [exp]	17.0	0.9368
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	17.0	0.9383
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10038050 [exp]	18.8	0.9323

Compare expression of checked genes

Lus10027969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.