Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48010 614 / 0 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G11050 334 / 1e-106 Protein kinase superfamily protein (.1) AT3G24540 258 / 1e-78 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G24550 255 / 3e-76 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G56120 258 / 1e-74 Leucine-rich repeat transmembrane protein kinase (.1) AT1G70460 253 / 1e-74 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G56140 254 / 1e-73 Leucine-rich repeat transmembrane protein kinase (.1) AT1G01540 243 / 1e-73 Protein kinase superfamily protein (.1.2) AT4G34440 247 / 6e-73 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT4G32710 239 / 7e-73 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008187 [exp] 1088 / 0 AT2G48010 660 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042678 [exp] 672 / 0 AT2G48010 781 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042679 [exp] 643 / 0 AT2G48010 678 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027971 [exp] 625 / 0 AT2G48010 646 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008186 [exp] 612 / 0 AT2G48010 647 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027972 [exp] 592 / 0 AT2G48010 601 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029626 [exp] 578 / 0 AT2G48010 672 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10001295 [exp] 320 / 1e-100 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10029711 [exp] 318 / 6e-100 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136466 [exp] 670 / 0 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136400 [exp] 668 / 0 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 528 / 0 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 456 / 5e-155 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.017G132800 [exp] 356 / 2e-114 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 349 / 5e-112 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 344 / 2e-110 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 343 / 1e-109 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.011G073516 [exp] 268 / 2e-82 AT1G29730 644 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G032100 [exp] 259 / 9e-81 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10027970 pacid=23181246 polypeptide=Lus10027970 locus=Lus10027970.g ID=Lus10027970.BGIv1.0 annot-version=v1.0 ATGACGTCCTCCTCCCTCCTCCCCTTCCTCCTCCTCCTCCTCCTAGCTCCAACCACCGCCGCTCAAACCAACACCACTTCATGCCCACTAGACTTCTCCA TCTTCCTCAACCTCGTCACCTCATCCTCCCCACGTCTTCCCGTTGACCGCTCCCAACTCTGCAACCAACTCCGCCGCACCCTCCGCCTCCTCCACTCCGA CTACCTCCGCCGAACCGGGACCTTCCTCCCGCCTCTCTCCTCCGCCGAATCCTGCTGGACATCCTTCCAGGGCCTCGTCGACGGCTACCTCCCGAATTTC GACGTCCGCTCCTCCTGCGGATTCCAAACCAGCTGGATCTCCCAGGGCTGCCTCAACATCACGACAATCGACGATTTCCAATCCCTAGTTTCCAGACCCT CTCTCAACAACGTCGCGTTGAATTGCAATCAGTCGCTCGAGAACAGATCTCCCTGCGCAGCTTGTACGACAGCTCTCTCCAGGCTCCAGGCGCTGTATTT CCCCCGGACTTCTTCTGTCGGGAACATCTCCGATTGCCAGGTTTATCCGTGGATCTACACCGCTGCAGTCGTCAATCAGCTCGGCCCTTCCGATCAGGGC ACCGCCAGGTGCTTGTTCTCCCTCCATTTCTCCTCCGGTGAATCAAACACTAGGAAGAAGAAATTAGTAACGATTCTAGCTGTCTGCTTAGGATCTTTCG CTCTAGCTTTCCTGGTTGTTGCTGTTTGTATTCATAAGATTAGGAAATCAAATTGGAAATCGAATAGGAAAGGGAAATTAGGGTATGTACGATTCAGATC GATTTTCCGGAGTGCGACTTTGCTGCAGTTTACGATAGATGAAATCAAGAAGGCGACTAAGAACTTCTCTAGAGATAACATCATAGGGCTTGGAGGATTT GGCAATGTGTACAAAGGGATATTGTCCGACGGATCAGAAGTTGCAGTGAAGAGATTCAAGAACAGTTCAGCAGCAGGGGACGCAAGCTTTGCGCACGAAG TCGAGGTGATCGCAAGCGTAAGGCATGTGAATTTGGTAGCCATGAAAGGCTACTGCATTGCCGAAGGACACCAGAGGATTATCATAACCGAGCTGGTGAA AAATGGCAGCCTCGCAGATCACTTATTCGGCGATAAAAGATCGAAACTGAGCTGGCCGATTCGTCAGAAGATTGCGTTAGGGATGGCGAGAGGACTAGCT TACTTGCATTACGGTGCACAGCCAGGGATCATCCACAGGGATATAAAGGCGAGCAATGTCTTGCTCGACGAGATATTCGAGGCGAAAGTTGCTGATTTCG GGTTGGCGAAGTTCAATCCGGAAGGGATGAGTCATTTGAGCACGAGAGTTGCGGGGACGATCGGGTATGTGGCTCCCGAGTATGCTTTATACGGACAGGT GACAGAGAGGAGCGACGTTTATAGCTACGGAGTGGTGTTGCTCGAGTTGTTGAGCGGGAACAAGGCGATAACAAAAGGTTCGGAGGATGGCAGCGATCCG AGTTTGTTGACCGATTGGGCGTGGTCGATGGTTAGGGAAGGAAGAGCGGTGGAGGTTGTGGAGGAGGGGGTTTCGGAGGAAGAGTGTGTTGATAGTGATG TGCTGGAGAGGTATGTGATGGTAGCTGTACTGTGTACGCACCCGCAGCTTCATGCTCGGCCGGCAATGGATCAGGTGGTGAAGATGTTGGAGGCTGAGCT TTGTGTTCCTGATATTCCTGAACGGCCTGGGATTCTGGTGGATAATATGGATAGATTGATGGGGAGTGAGCAGCAGGTGTTTGATCCTTCTGGTTCTGGC CGTCAGATGGTTCGTTGA
AA sequence Show only first row Show all	>Lus10027970 pacid=23181246 polypeptide=Lus10027970 locus=Lus10027970.g ID=Lus10027970.BGIv1.0 annot-version=v1.0 MTSSSLLPFLLLLLLAPTTAAQTNTTSCPLDFSIFLNLVTSSSPRLPVDRSQLCNQLRRTLRLLHSDYLRRTGTFLPPLSSAESCWTSFQGLVDGYLPNF DVRSSCGFQTSWISQGCLNITTIDDFQSLVSRPSLNNVALNCNQSLENRSPCAACTTALSRLQALYFPRTSSVGNISDCQVYPWIYTAAVVNQLGPSDQG TARCLFSLHFSSGESNTRKKKLVTILAVCLGSFALAFLVVAVCIHKIRKSNWKSNRKGKLGYVRFRSIFRSATLLQFTIDEIKKATKNFSRDNIIGLGGF GNVYKGILSDGSEVAVKRFKNSSAAGDASFAHEVEVIASVRHVNLVAMKGYCIAEGHQRIIITELVKNGSLADHLFGDKRSKLSWPIRQKIALGMARGLA YLHYGAQPGIIHRDIKASNVLLDEIFEAKVADFGLAKFNPEGMSHLSTRVAGTIGYVAPEYALYGQVTERSDVYSYGVVLLELLSGNKAITKGSEDGSDP SLLTDWAWSMVREGRAVEVVEEGVSEEECVDSDVLERYVMVAVLCTHPQLHARPAMDQVVKMLEAELCVPDIPERPGILVDNMDRLMGSEQQVFDPSGSG RQMVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027970 [exp]	0	1
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	6.2	0.8647
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	10.5	0.8330
AT1G79160			unknown protein		Lus10031179 [exp]	10.7	0.8167
AT1G77580			Plant protein of unknown funct...		Lus10012712 [exp]	11.5	0.8223
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	14.0	0.8496
AT4G24290			MAC/Perforin domain-containing...		Lus10010894 [exp]	16.2	0.8724
AT4G24290			MAC/Perforin domain-containing...		Lus10012717 [exp]	16.3	0.8796
AT2G24300			Calmodulin-binding protein (.1...		Lus10036301 [exp]	17.2	0.8339
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10034667 [exp]	17.7	0.8381
AT5G56350			Pyruvate kinase family protein...		Lus10013396 [exp]	18.5	0.8413

Compare expression of checked genes

Lus10027970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.