Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48010 617 / 0 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G11050 320 / 5e-101 Protein kinase superfamily protein (.1) AT1G56120 264 / 2e-76 Leucine-rich repeat transmembrane protein kinase (.1) AT3G24550 254 / 1e-75 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT4G23130 254 / 1e-75 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT1G52290 250 / 2e-75 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G09010 246 / 2e-75 Protein kinase superfamily protein (.1) AT2G42960 249 / 3e-75 Protein kinase superfamily protein (.1) AT3G24540 249 / 4e-75 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G01540 247 / 8e-75 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008186 [exp] 1111 / 0 AT2G48010 647 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042679 [exp] 803 / 0 AT2G48010 678 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027972 [exp] 774 / 0 AT2G48010 601 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008187 [exp] 633 / 0 AT2G48010 660 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027970 [exp] 628 / 0 AT2G48010 653 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029626 [exp] 507 / 1e-174 AT2G48010 672 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042678 [exp] 508 / 8e-173 AT2G48010 781 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029711 [exp] 335 / 3e-106 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10028549 [exp] 318 / 2e-103 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G040200 [exp] 539 / 0 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136400 [exp] 487 / 1e-164 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 483 / 3e-163 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 464 / 5e-158 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.017G132800 [exp] 347 / 5e-111 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 340 / 3e-108 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 340 / 5e-108 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 333 / 5e-106 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.011G073516 [exp] 277 / 9e-86 AT1G29730 644 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072841 [exp] 269 / 5e-84 AT1G07650 489 / 3e-165 Leucine-rich repeat transmembrane protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10027971 pacid=23181147 polypeptide=Lus10027971 locus=Lus10027971.g ID=Lus10027971.BGIv1.0 annot-version=v1.0 ATGTTCGCCGTTCACCGCTACCTCCTCCTTCTCCTCTTCTTTCTACTAACACTCACCCCATCAATCCTCTCTCGAAACAACAACTCCACCGACCCCTGCC CGCTAGACTTCTCCGGCCTCCGGCGACTCATCGAGAGCTCCGAAATCCCAACCCTCGACCGCACCCAGGCATGTCAGAACGTCCGCCAGGGCCTCCGCGT CGTCCTCTCCGAATACCTCCAGCGCACCGGCGAGTTCCTCCCTCCTCAATCCACCGCCGACTCCTGCTGGCTTTCCTACCAGCGACTCATCGACAGCATC TCCCCGAACAGGTCCGACATCCGTACCACCTGCGGATTCCAGACCACCTGGATCTCCCAAGGCTGCGTCAACGTCACCACCAGGCAGGACTTCGAGTCCA GAGTCACCAGATCCGAGCTCGACCGAGTCAGATCCAGCTGCAGTCAGTCCCTAGAAAACCGCGCCCCTTGCGCCACCTGCATGACTGCCATATCCGACGG CCTCCACTTCACCGGAACTTCAATCAGCAACGTCTCCGATTGTCCTGTTTATCCGCTGATCTACACCGCCGCGTTCGTCAACCAGCTCGGCCCCTCCGAT CGAGGTACTGTCAAGTGCTTATTCTTGCTTGATTTCCCTTTAAAGGAATCGAACAGTAGCGGAAGGAACCATGGGAGGAGAACCGCAATTCTAGCTGGTT CAATTGGGGGTTCTTGCGTGGGGATTTTGATTTTAGGGTTAGGAATTTGGATTCTGCGAAGGAAATGGAAGAGGAAAATGCAGGAGAAGAAAGAGGAAAT GGAGATGGGATTAGATGCCGGACTAGTGAAATTCAGCTACGAGGAGATTAAAAAAGCGACTAAGAATTTCTCGCTCGATAACATCATAGGTAAAGGAGGA TTCGGAAACGTCTACAGAGGCGAATTCCCCGACGGTACGGAAGTTGCAGTGAAGAGATTCAAGAACTGTTCGGCCACCGGGGACGAAAGCTTCGCTCATG AAGTTGCGGTTATAGCAAGCATCCGCCATTTGAATTTAGTGGCTCTGATAGGCTACTGCATCGCCACTACTCCCTTAGAAGGCCACCAGAGGATGATCAT TTGCGAATTGATGAAGAACGGCAGCCTACACGATCATTTATTCGAGTCGAAATCGAGTTCTAAGCTCAGCTGGCCGATTCGACAGAAGGTTGCGTTGGGT ACCGCGAGAGGACTTGCTTACTTACACACGGGAGCACAACACTCGATCATTCACCGAGACATCAAGGCGCAGAACATCCTCCTTGACGAGACGTTCGAGG CGAAGGTGGCTGATTTCGGGCTGGCCAAATCGAACACGGAAGGTGCGACTCACATGAGCACTAGAGTGGCCGGGACGTGGGGGTATTTGGCTCCGGAGTA TGCATTATATGGACAGTTAACGGAGAGGAGCGATGTTTATAGCTACGGGGTGTTGTTGTTGGAATTGTTGAGTGGGAGGAAGGCGTTGATTCGGGTCGAT GCAGGGGACGGGGTCGACACGAGCCAGCCGTGTTTAGTGGCTGACTGGGCGTGGACTTTGGCCAAGGAAGGGAGGGCGTTGGACGTGGTGGAGGATGGGT TGCCGGAGCGAGGTTCTGATGATGTGCTGGAGAGGTTCGTTATGGTGGCGATTTTATGCTCCCATCCGGAGCTTCATGCGAGGCCGACGATGGAGCAGGT GGTGAAGATGTTGGAGGCGGAGATGGTGATTCCAACGATGACGAATCGGCCGATGTACAACATGGTGGAAGGAATGGATGATGTAGAGATATCGATGGAT AGCTTGGGGTTCTCTTCTGGGTATCATCAGCCGTATGGAAGTATTGCTAGTGGTGGGACAGTAAAAGAAGAAGATTCAGATTCTAGGACATCAGAATCTT CTTAA
AA sequence Show only first row Show all	>Lus10027971 pacid=23181147 polypeptide=Lus10027971 locus=Lus10027971.g ID=Lus10027971.BGIv1.0 annot-version=v1.0 MFAVHRYLLLLLFFLLTLTPSILSRNNNSTDPCPLDFSGLRRLIESSEIPTLDRTQACQNVRQGLRVVLSEYLQRTGEFLPPQSTADSCWLSYQRLIDSI SPNRSDIRTTCGFQTTWISQGCVNVTTRQDFESRVTRSELDRVRSSCSQSLENRAPCATCMTAISDGLHFTGTSISNVSDCPVYPLIYTAAFVNQLGPSD RGTVKCLFLLDFPLKESNSSGRNHGRRTAILAGSIGGSCVGILILGLGIWILRRKWKRKMQEKKEEMEMGLDAGLVKFSYEEIKKATKNFSLDNIIGKGG FGNVYRGEFPDGTEVAVKRFKNCSATGDESFAHEVAVIASIRHLNLVALIGYCIATTPLEGHQRMIICELMKNGSLHDHLFESKSSSKLSWPIRQKVALG TARGLAYLHTGAQHSIIHRDIKAQNILLDETFEAKVADFGLAKSNTEGATHMSTRVAGTWGYLAPEYALYGQLTERSDVYSYGVLLLELLSGRKALIRVD AGDGVDTSQPCLVADWAWTLAKEGRALDVVEDGLPERGSDDVLERFVMVAILCSHPELHARPTMEQVVKMLEAEMVIPTMTNRPMYNMVEGMDDVEISMD SLGFSSGYHQPYGSIASGGTVKEEDSDSRTSESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027971 [exp]	0	1
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10012351 [exp]	2.0	0.8692
AT4G29140		ADS1	ACTIVATED DISEASE SUSCEPTIBILI...		Lus10012944 [exp]	6.4	0.8709
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027972 [exp]	7.5	0.8347
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10028922 [exp]	11.0	0.8422
AT4G14380			unknown protein		Lus10021182 [exp]	12.6	0.8241
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	18.2	0.7924
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10020647 [exp]	19.4	0.7979
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10009555 [exp]	20.0	0.7777
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	23.9	0.8387
AT5G23340			RNI-like superfamily protein (...		Lus10013444 [exp]	24.2	0.7966

Compare expression of checked genes

Lus10027971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.