Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48010 580 / 0 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G11050 322 / 3e-102 Protein kinase superfamily protein (.1) AT1G56140 272 / 4e-80 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 266 / 5e-78 Leucine-rich repeat transmembrane protein kinase (.1.2) AT4G23130 259 / 8e-78 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT1G56130 265 / 9e-78 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 264 / 3e-77 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 264 / 4e-77 Leucine-rich repeat transmembrane protein kinase (.1) AT3G24540 252 / 1e-76 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G53380 256 / 3e-76 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027971 [exp] 770 / 0 AT2G48010 646 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008186 [exp] 761 / 0 AT2G48010 647 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042679 [exp] 674 / 0 AT2G48010 678 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042678 [exp] 624 / 0 AT2G48010 781 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008187 [exp] 593 / 0 AT2G48010 660 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027970 [exp] 586 / 0 AT2G48010 653 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029626 [exp] 529 / 0 AT2G48010 672 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029711 [exp] 317 / 9e-100 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10028549 [exp] 305 / 6e-99 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136466 [exp] 614 / 0 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136400 [exp] 612 / 0 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 520 / 2e-179 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 435 / 2e-147 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.017G132800 [exp] 349 / 2e-112 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 343 / 4e-110 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 343 / 6e-110 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 329 / 5e-105 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 276 / 2e-87 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.011G073516 [exp] 278 / 1e-86 AT1G29730 644 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10027972 pacid=23181194 polypeptide=Lus10027972 locus=Lus10027972.g ID=Lus10027972.BGIv1.0 annot-version=v1.0 ATGGAGGCTAACAACACCTCAATCTTCGGCGACGAAAACGGCGGCAACAGCATCTTCTGCGCTTACGCCCGTCAGGGAATCCGACTCATCCAATCCGAGT ACCTCTGGAGCAACGACGCTTTCGTCCCTCCGCTCGCCTCCGCGGACTCCTGCTGGCGCTCCTACCAGCGACTCGTCGACGACTTCTACATCGCCAAGTT CGACGTCCGCACCACGTGCGGATTCCAGACCGACTGGATCTCCCAGGGCTGCGTTAACGTCACCACAAAACAGGACTTCGAGTCCAGAGTCTCCAGATCC GAGCTCGAACGCGTCAGATCCAGCTGCAACCAGTCACTCGAGAGCGGTTTGCCTTGCGCTACCTGCGTCACCGCCTTGTCTGGCGGTCTTCAATTCACCG GAACTTCCATCGGTAATGTCTCCGATTGTGCTGCTTATCCATTGATCTACGCCGCCGCGATTATGAACGAGTGGGGCCCCATCGACCCAGGTACGGCTAA TTGCTTGTTCTTCCTTGATTTCACTTCAAAGGAATCGAACAGTAGTGGGAGGAAGAGAGTCGCGATTCTTGCTGGTTCAATTGGCGGTTCTTGCGTGGGG ATTTTGGTTTTAGGGTTGGGGATTTGGATTCTGAGGATGAAAAAACGGAAGAGGGGTAATGATAGCGAAGAGATTGAGATGGGATTGGATGCTGGGGTAG TGAAATTCGGCTACGAGGAGATCAAGAAGGCGACTAAGAACTTCTCCGCGGATAACATCATAGGAAAAGGAGGATTTGGTAATGTTTACAGAGGCGAATT CCCCGACGGGTTAAAAGTTGCAGTGAAGAGATTCAAGAACTGTTCGAAATCCGGGGACGAGAGTTTCGCTCACGAAGTTCGAGTAATCGCAAGCATTCGG CATCTAAACTTGATGGCTCTGAGAGGCTACTGCATTCCCCCAGAAGGCCACGAGAGGATAATCATCTTAGAACTGATGAAGAACGGTAGCCTACATGATC ACTTATTCCAATCCAAGACGAATAATAAGCTCAGCTGGCCGATTCGCCAGAAAATTGCAATCGGAACAGCGAGAGGACTAGCTTACTTACATACCGGAGC ACATCACACAATCATACACAGAGACATCAAAGCTCATAACATCCTCTTGGATGACACATTCGAGGCTAAGGTGGCAGATTTCGGGCTGGCGAAATCAAAT CCTGAAGGTGCGACGCATATGAGCACTAGAGTTGCTGGGACGTGGGGGTATTTGGCACCGGAGTATGCTATGTACGGACGGGTTACCGAGAAGAGCGACG TGTATAGCTATGGTGTGGTGTTGTTGGAGTTGTTGAGTGGGAGGAAGGCTTTGATAAGGAGCGATGATGGAGAGCCGCGTATGGTGGGGGATTGGGCATG GTCGTTGGCGAAGGAAGGGAAGGCGTTGGACGTGGTGGAAGATGGGGCGCTGGAGCTAGGTTCTGATGATGATGTGATGGTGAGGTTTGTTATGGTGGCT ATTTTGTGTTCGCATCCAGAGCCTCAAGTGAGGCCGGGGATGGAGGAGGTGGTGAAGATGTTGGAGGGGGAGATGGTGGTTCCCACAATACCGAATCGGC CGATGTTTATGGTGGAAGGAATGGAGGAGGATGCAGAGGTATCGGTGGATAGCTTGGGGTTTTCTTCTGAGCATCAGCATCAGCATCAGCATCAGCATCA GCTGTATGGAATCGTTGATGGTGGAACATCAGAATCATCCTAG
AA sequence Show only first row Show all	>Lus10027972 pacid=23181194 polypeptide=Lus10027972 locus=Lus10027972.g ID=Lus10027972.BGIv1.0 annot-version=v1.0 MEANNTSIFGDENGGNSIFCAYARQGIRLIQSEYLWSNDAFVPPLASADSCWRSYQRLVDDFYIAKFDVRTTCGFQTDWISQGCVNVTTKQDFESRVSRS ELERVRSSCNQSLESGLPCATCVTALSGGLQFTGTSIGNVSDCAAYPLIYAAAIMNEWGPIDPGTANCLFFLDFTSKESNSSGRKRVAILAGSIGGSCVG ILVLGLGIWILRMKKRKRGNDSEEIEMGLDAGVVKFGYEEIKKATKNFSADNIIGKGGFGNVYRGEFPDGLKVAVKRFKNCSKSGDESFAHEVRVIASIR HLNLMALRGYCIPPEGHERIIILELMKNGSLHDHLFQSKTNNKLSWPIRQKIAIGTARGLAYLHTGAHHTIIHRDIKAHNILLDDTFEAKVADFGLAKSN PEGATHMSTRVAGTWGYLAPEYAMYGRVTEKSDVYSYGVVLLELLSGRKALIRSDDGEPRMVGDWAWSLAKEGKALDVVEDGALELGSDDDVMVRFVMVA ILCSHPEPQVRPGMEEVVKMLEGEMVVPTIPNRPMFMVEGMEEDAEVSVDSLGFSSEHQHQHQHQHQLYGIVDGGTSESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027972 [exp]	0	1
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027971 [exp]	7.5	0.8347
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10033651 [exp]	8.4	0.8684
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	13.2	0.8541
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10021745 [exp]	17.0	0.8396
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	18.9	0.8513
AT4G29140		ADS1	ACTIVATED DISEASE SUSCEPTIBILI...		Lus10012944 [exp]	23.1	0.8366
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	26.6	0.8394
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042378 [exp]	31.1	0.8304
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	32.4	0.8471
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10009555 [exp]	33.5	0.7699

Compare expression of checked genes

Lus10027972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.