Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48020 49 / 1e-07 Major facilitator superfamily protein (.1.2) AT3G05150 40 / 0.0002 Major facilitator superfamily protein (.1) AT1G08900 39 / 0.0003 Major facilitator superfamily protein (.1.2.3) AT1G08890 38 / 0.001 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008179 [exp] 77 / 2e-17 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 77 / 4e-17 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2) Lus10042676 [exp] 62 / 8e-12 AT2G48020 603 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 0 / 1 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027976 [exp] 0 / 1 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 0 / 1 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008182 [exp] 0 / 1 AT2G48020 613 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 0 / 1 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136600 [exp] 61 / 1e-11 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.002G212900 [exp] 57 / 2e-10 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10027973 pacid=23181107 polypeptide=Lus10027973 locus=Lus10027973.g ID=Lus10027973.BGIv1.0 annot-version=v1.0 ATGCGACCAGGTGCCCAAAGTAAAGCTGGTGGACTTGTTCAACAGAAGATACCTAAGATCAGTCACTGTGAGTCCTCTCTTTCATCTGTTACTGATTTTG AAGCTCCGTGGTCCTTTGGATTCTCGCCCAGTGTTGGAACCACTACCTACGCCATTCTTCATATCATTGAGACGCTCACCATACCACAAGTGATCGACAG AGCAGGAAGGAAGCCACTTTTGTTGGTTTCAGGATCTGGTTTGGTGCTGGCCTGCTTGATAATAGGCCTTTCATTCTACCTCAAGCTAATGTCATCCAAG CACACAACCTGGAGCAGTGGCTGCCAGTGGAGGCTTGACTTGGAGCTTTGTTTTTGTTTTCATGTAATTGGAACTGAACTCATGAACCTCACTGTTGAGG AGAGGCTATAG
AA sequence Show only first row Show all	>Lus10027973 pacid=23181107 polypeptide=Lus10027973 locus=Lus10027973.g ID=Lus10027973.BGIv1.0 annot-version=v1.0 MRPGAQSKAGGLVQQKIPKISHCESSLSSVTDFEAPWSFGFSPSVGTTTYAILHIIETLTIPQVIDRAGRKPLLLVSGSGLVLACLIIGLSFYLKLMSSK HTTWSSGCQWRLDLELCFCFHVIGTELMNLTVEERL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48020			Major facilitator superfamily ...		Lus10027973 [exp]	0	1
AT1G07270			Cell division control, Cdc6 (....		Lus10000427 [exp]	4.6	0.8446
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	7.9	0.8785
AT5G59190			subtilase family protein (.1)		Lus10000396 [exp]	11.2	0.8280
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	15.5	0.8661
AT1G73350			unknown protein		Lus10031897 [exp]	28.0	0.8371
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10009163 [exp]	35.6	0.8156
					Lus10037274 [exp]	40.3	0.8091
AT1G13440		GAPC2, GAPC-2	GLYCERALDEHYDE-3-PHOSPHATE DEH...		Lus10022332 [exp]	40.5	0.8188
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	43.5	0.8164
					Lus10014678 [exp]	51.4	0.8194

Compare expression of checked genes

Lus10027973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.