Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19290 456 / 2e-147 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 266 / 2e-77 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 267 / 1e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 251 / 3e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 255 / 4e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62670 248 / 6e-72 RPF2 rna processing factor 2 (.1) AT5G59900 252 / 2e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 245 / 5e-71 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 245 / 7e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 242 / 6e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008185 [exp] 1044 / 0 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 294 / 5e-87 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 256 / 3e-73 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10027916 [exp] 253 / 1e-72 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 249 / 1e-71 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021989 [exp] 256 / 3e-71 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 253 / 4e-71 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 246 / 3e-70 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 243 / 5e-70 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040200 [exp] 688 / 0 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 307 / 3e-90 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 294 / 7e-87 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046000 [exp] 278 / 2e-82 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 267 / 5e-78 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G236800 [exp] 267 / 1e-76 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 261 / 1e-75 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 254 / 1e-73 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G043101 [exp] 258 / 7e-73 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 253 / 1e-72 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027974 pacid=23181170 polypeptide=Lus10027974 locus=Lus10027974.g ID=Lus10027974.BGIv1.0 annot-version=v1.0 ATGCTTAGGTACTCATCCATTCGTTCTCCTCCGTCAGTACCTTCGTTTCTCTTCTCTTGCGTGCACCGCCGTCGGTCGATACACTGGAAGCCTCATCACG AATCCAAATTGACTCAACCGGAAATCGTAGACAGGATATCCCGCCTTATTGTTCTCAACCGTCACGATGCCCTGGATGGCCTCAAATTCGATTTCTCCGA TAACCTCCTTGACTCCGTTCTACTGAAACTCAGGCTTAACGCCGCTGCTTGTCTGTGCTTCTTCAAATTGGCCTCCAGGCAACCAAAGTTTAGACCGGAA CTGAAGTCTTATTGCAAGCTGGTTCACATTCTGTCGCGTGCTCGAATGTATGAGGAGACGAGATCGTATTTGAGCGAATTGGTTGGTTTGTGCAAGAACG ATTTTCATTTTTTCGCTGTTTGGGATGAGCTCGTTAGGTTTTACCATGAATTTGGATTCTCTCCTACCGTGTTCGATATGATACTGAAGGCTTACGCGGA GAAGGGAAAGGTGAAGAATGCACTCCATGTGTTTGATAATATGTCGAAGTTCGGTCGGGTGCCGAGCTTGAGGTCTTGTAACAGTTTGTTGAGTAATTTA GTTAGGAAAGGACAAAGTCACTCTGCTGTGCTTGTTTATGACCACATGCTGAACATGGGGATTGTGCCGGACGTGTTCACTATCTCAATTTTAGTTAATG CGTTTTGCAAGCAAGGGAGACTAGATAGAGCTGTGGAGTTTGTTAAAGAAATGGAGAATTCAGGTTTTGAGTTGAATGTGGTGTCCTACAATAGCTTGAT TGATGGGGAAGGCCTTATTGATAGAGCTTTCAGTGTTTGTGAAATGATGGTCTGGGAGGGCATTGATCCAAGCATTGTAACTTACAACACTCTTTTGAAA GGACTATCCCGTGCGGGTAACCTTGAGGATGCTCTGCGATGCTGGGATCTTATGCGAAGGAGAGGTGTGGAACCCAATGAGATCAGCTATTGTACTTTAC TTGATGGCCTTTTCAAGATAGGAGACACTTCGAAGGCTTTAACCCTGTGGAACGATATCCTGGTTAGGGGTTTTACCAAAAATACACATGCTTTTAATAT AATGATCAATGGGCTGTGTAAGGTGGGTAAAATGGTTGAAGCTGAGCAGACTTTTTGCAGAATGGTGGAATTGGGTTGTAGACCTGATGGCATAACATAC AGAACTCTGAGCGATGGGTATTGTAAGGCTGGAAATGTAGAAGAAGCACTTAAAGTCAAAGAGAAGATGGAAAAAGAAGCAATGGCTCCTTCAATCGAAA TGTACAACTCTCTGGTTACAACACTTTTCAAGCGTAGGGAAGTGAATAAGGTTTTGGATCTTCTTGATGAAATGGATAAGCATCAGTTAACACCTAATGT TTTTACTTATGGAACTATAATTTCTGGCTGGTGTGATGAAGGAAGGCTGGATAGAGCTGTTACTGCATATTTTGAGATGATATCGAAGAAAATTGCACCG AATTTGATTATATGTGGAAAAATTATTAGCAGCCTCTATAATGTTGGCAGGATAGACGAAGCAAATATATTACTGCAGAAGATTGTTGATTTCAGTGATT TGGACCCCAATTTGTTTGGAAAGCCTCCACAAAAGGATGCTAGATATGTAGATTGCGAGAAGATCGCTGTGACCCTTGATCATAATGGTACTAGTTTCTC TCTACCCAACAATGTGCTATATAATATTGCTATTTCTGGGCTTTCTAAGACTGGCACAGTTGATGATGCAAGAAGATTTTTCTCAAGTTTGCTGCATAGA GGTTTTGTTCCAGATAACTTCACTTACTGCACGCTAATTCATGGCTGTTCAGCTGCTGGTAATGTGATTGAAGCCTTCAGATTGCGTGATGAAATGTTGG TACGTGGTATAATTCCAAACATAGCCACGTACAATGCCTTAATGAACGGCCTGTGTAAATCTGGAAATATGAGTCGAGCACAAAGACTTTTTGATAAACT CCCCCTTAAAGGGCTTGCTCCAAATGTTGTCTCTTACAATATTCTCATAGATGGGTACTGTAGATGTAGACAGGCTGAAATAGCTTTGGATTTGAAGGAC AGAATGGTAACACAAGGGATTTCTCCTTCTATAATTACTTTCTCTTCTCTGATAAATGGTCTTTGTAAGCAAGGAGACGTTGAAAAAGCTGAGAAGCTCT TGGGTGAGATGACTGAGCAATTCGCTGATCACAACCTGGGCTCATTTAAGAAAGTAGTGAAGGATTGTGCTCAACCAAGGGAACCAAAGAAGATCTCCGG GATTAATGATAAAGCACATATTGATTCCTATGCTGGTTTTAGTCCTTATGAGCAATTTGAGTTATTAGGGGTCTCCATTGCTGAACGCACACTGCAGGGA TACTCTTTGGATGGGATTGGAGCTGTATGGAACTCTGAAGCTGTGCGTTGA
AA sequence Show only first row Show all	>Lus10027974 pacid=23181170 polypeptide=Lus10027974 locus=Lus10027974.g ID=Lus10027974.BGIv1.0 annot-version=v1.0 MLRYSSIRSPPSVPSFLFSCVHRRRSIHWKPHHESKLTQPEIVDRISRLIVLNRHDALDGLKFDFSDNLLDSVLLKLRLNAAACLCFFKLASRQPKFRPE LKSYCKLVHILSRARMYEETRSYLSELVGLCKNDFHFFAVWDELVRFYHEFGFSPTVFDMILKAYAEKGKVKNALHVFDNMSKFGRVPSLRSCNSLLSNL VRKGQSHSAVLVYDHMLNMGIVPDVFTISILVNAFCKQGRLDRAVEFVKEMENSGFELNVVSYNSLIDGEGLIDRAFSVCEMMVWEGIDPSIVTYNTLLK GLSRAGNLEDALRCWDLMRRRGVEPNEISYCTLLDGLFKIGDTSKALTLWNDILVRGFTKNTHAFNIMINGLCKVGKMVEAEQTFCRMVELGCRPDGITY RTLSDGYCKAGNVEEALKVKEKMEKEAMAPSIEMYNSLVTTLFKRREVNKVLDLLDEMDKHQLTPNVFTYGTIISGWCDEGRLDRAVTAYFEMISKKIAP NLIICGKIISSLYNVGRIDEANILLQKIVDFSDLDPNLFGKPPQKDARYVDCEKIAVTLDHNGTSFSLPNNVLYNIAISGLSKTGTVDDARRFFSSLLHR GFVPDNFTYCTLIHGCSAAGNVIEAFRLRDEMLVRGIIPNIATYNALMNGLCKSGNMSRAQRLFDKLPLKGLAPNVVSYNILIDGYCRCRQAEIALDLKD RMVTQGISPSIITFSSLINGLCKQGDVEKAEKLLGEMTEQFADHNLGSFKKVVKDCAQPREPKKISGINDKAHIDSYAGFSPYEQFELLGVSIAERTLQG YSLDGIGAVWNSEAVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10027974 [exp]	0	1
ATCG00500		ATCG00500.1, AC...	acetyl-CoA carboxylase carboxy...		Lus10002473 [exp]	15.8	0.7929
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10006411 [exp]	25.8	0.7638
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032826 [exp]	57.2	0.7384
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028199 [exp]	58.4	0.7488
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	59.5	0.7457
					Lus10039498 [exp]	68.1	0.7254
AT3G11900		ANT1	aromatic and neutral transport...		Lus10017224 [exp]	79.9	0.7087
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10015819 [exp]	101.3	0.6871
AT4G34760			SAUR-like auxin-responsive pro...		Lus10012189 [exp]	126.4	0.7109
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10009173 [exp]	142.1	0.7012

Compare expression of checked genes

Lus10027974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.