Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48020 608 / 0 Major facilitator superfamily protein (.1.2) AT5G18840 523 / 1e-179 Major facilitator superfamily protein (.1) AT3G05150 498 / 2e-170 Major facilitator superfamily protein (.1) AT1G54730 472 / 5e-160 Major facilitator superfamily protein (.1.2.3) AT1G08930 398 / 4e-131 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT1G08920 396 / 9e-131 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT3G20460 387 / 5e-127 Major facilitator superfamily protein (.1) AT1G19450 382 / 8e-125 Major facilitator superfamily protein (.1) AT3G05160 378 / 7e-124 Major facilitator superfamily protein (.1.2) AT3G05165 377 / 2e-123 Major facilitator superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008183 [exp] 729 / 0 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 728 / 0 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 714 / 0 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 672 / 0 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008182 [exp] 660 / 0 AT2G48020 613 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027976 [exp] 634 / 0 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2) Lus10042676 [exp] 582 / 0 AT2G48020 603 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 527 / 0 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10035354 [exp] 483 / 4e-164 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212900 [exp] 662 / 0 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 612 / 0 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 541 / 0 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 482 / 7e-164 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 409 / 1e-135 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 409 / 3e-135 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 397 / 5e-131 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 394 / 1e-129 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.007G024300 [exp] 386 / 1e-126 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.002G259900 [exp] 369 / 6e-120 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10027975 pacid=23181158 polypeptide=Lus10027975 locus=Lus10027975.g ID=Lus10027975.BGIv1.0 annot-version=v1.0 ATGTCAATCAAGGAAGCCGTGGAGAAAAACAATCATACTGATACTGAAAACAACAACATGAGGGAGCCATTCATACGGAAGAATTATTACACATACGAGG AAGATGGGTCCTCGGAGAACAAGAGTGGCAGCCTATGGATGGTTTACTTCAGCACTTTCGTTGCCATCTGCGGTGCTTACGAGTTCGGTTGCTGCGTGGG ATTTTCGTCGCGCACCCAAGACGCAATTAGGAAAGATCTTTCACTGTCTCTGGCCGAGGCAATGAGGTTGTCGAGTGCTTTTTGTGTAGCTGGCTGGCTA GCCATTTACTTTGCTCAGGGTGCAATGGCATTGGACATTGGCAGATTGGCAACCGGCTATGGAATGAGGGTTTTGTACTATGTGAGGGCTCTTGCTTTAA CTGGACTAATCCCTTGTTTAATCTTGCTTGTCGGGCTGATGTTCATGCCTGAATCTCCTAGATGGCTAGCAAAGATAGGGAACGAGAAGGATTTCGAAGT TGCACTGCAGAAACTCCGCGGCAAGGATGCTGATATTTCGAAAGAGGCTAATGAAATCAAGGAATACATTGAGACACTCGACAGGCTCCCCAAAGTAAAG ATGATCGACTTGTTCAATAGAAGATACCTAAGATCAGTCATTATTGGTGTTGGGTTGATGCTGGCCCAACAATTTGGACGAATTAATGCAGTCTGCTTCT ATGACAGCAACATATTCAAATCAGCAGGATTCTCCCCTGATGTTGGAACTATTACCTATGCAATTATCCAGATGGTAGTCACACTCCTAATCACACAAGT GATTGACAGAGCAGGAAGGAAGCCTCTTTTACTGGTTTCTGGATCTGGTTTAGTACTAGCTTGTTTGATGACAGCCCTTTCATTCTACCTCAAGGTTAAT GAATTGGCTCTCCACATTGTCCCAATGATGGCTGTAACCGGCATATCGTTATACATTGGATTCTATTCAGTTGGAATGGGTGCAGTTCCATGGGTCGTTA TGTCCGAGGTGGGATTTTCGTCACCCACCCAAGATGCAATCAGGAAAGATCTGTCACTGTCTCTGGCCGAGTATTCAGTGTTTGGTTCGATTTTGACGTT CGGAGCAATGATCGGTGCTGCTGCTAGCGGATATTTGGCTGATCAACTTGGTCGCAAAGGGGCAATGAGATTGTCGACTGCCTTCTGTGTAGCTGGCTGG CTAGCCATTTACTTCGCTCAGGGAGCAGTGGCATTGGACATTGGTAGATTGGCAACTGGATTTGGAATGGGAGTCTTCTCCTATGTGGTGCCAGTTTTCA TATCGGAGATTGCGCCAAAGAACCTACGAGGGGCTCTAGCTACATTGAATCAGGTCATGATCTGCGGAGGAGCATCAGCATCTTTCGTTCTAGGCACATT CCTGACGTGGAGAGCTCTTGCTTTAACTGGACTAGTCCCTTGTGCAGTCCTGTTGATTGGGCTAATGTTCATGCCTGAATCTCCTAGATGGCTAGCCAAG ACAGGAGACGAGAAGGATTTCGTACTTGCATTGCAGAAACTTCGTGGCAAGGATGCTGATGTTTCTGACGAGGCAGATGAGATCAAGGAATACATCGAGA CACTCGACCGGCTGCCCAAAGTAAAGATGATGGACTTGTTCAACAGAAGATACCTAAGATCAGTCATTATTGGCGTTGGGTTGATGGTGGTCCAACAATT TGGAGGAATCAATGGAGTCTGCTTTTACGTCAGCAACATTTTCAAGTCTGCAGGATTCTCGCCGAGTGTTGGAACTATCATATACGCCATTATTCAGATT GTAGTGACACTCGCCATAACACAAGTGATCGACAGAGCAGGAAGGAAGCCACTTTTGTTGGTTTCGGGATCTGGTTTGGTTCTGGCCTGCTTGATAATAG GCCTTTCATTCTACCTCAAGGTCAATGAACTGGCTCTCAACATCGTCCCCATGCTGGCAGTAACTGGCATACTGTTATACGTTGGATCCTTTTCAGTTGG AATGGGTGCTGTTCCATGGGTCATCATGTCTGAGATATTCCCAATAAACATAAAGGGAACAGCTGGAGGATTTGCAACACTGGTGAACTGGTTTGGTGCA TGGGCAGTTTCCTACACATACAACTTCTTAATGTCCTGGAGCTCCTATGGTACATTTCTTCTTTATGCTGGAGTCAATGCACTAAGTATCATATTCGTTA TCAAGCTAGTACCGGAGACGAAAGGCAGAACCTTAGAACAGATACAAGCAGCCATTAATGGTTAG
AA sequence Show only first row Show all	>Lus10027975 pacid=23181158 polypeptide=Lus10027975 locus=Lus10027975.g ID=Lus10027975.BGIv1.0 annot-version=v1.0 MSIKEAVEKNNHTDTENNNMREPFIRKNYYTYEEDGSSENKSGSLWMVYFSTFVAICGAYEFGCCVGFSSRTQDAIRKDLSLSLAEAMRLSSAFCVAGWL AIYFAQGAMALDIGRLATGYGMRVLYYVRALALTGLIPCLILLVGLMFMPESPRWLAKIGNEKDFEVALQKLRGKDADISKEANEIKEYIETLDRLPKVK MIDLFNRRYLRSVIIGVGLMLAQQFGRINAVCFYDSNIFKSAGFSPDVGTITYAIIQMVVTLLITQVIDRAGRKPLLLVSGSGLVLACLMTALSFYLKVN ELALHIVPMMAVTGISLYIGFYSVGMGAVPWVVMSEVGFSSPTQDAIRKDLSLSLAEYSVFGSILTFGAMIGAAASGYLADQLGRKGAMRLSTAFCVAGW LAIYFAQGAVALDIGRLATGFGMGVFSYVVPVFISEIAPKNLRGALATLNQVMICGGASASFVLGTFLTWRALALTGLVPCAVLLIGLMFMPESPRWLAK TGDEKDFVLALQKLRGKDADVSDEADEIKEYIETLDRLPKVKMMDLFNRRYLRSVIIGVGLMVVQQFGGINGVCFYVSNIFKSAGFSPSVGTIIYAIIQI VVTLAITQVIDRAGRKPLLLVSGSGLVLACLIIGLSFYLKVNELALNIVPMLAVTGILLYVGSFSVGMGAVPWVIMSEIFPINIKGTAGGFATLVNWFGA WAVSYTYNFLMSWSSYGTFLLYAGVNALSIIFVIKLVPETKGRTLEQIQAAING

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48020			Major facilitator superfamily ...		Lus10027975 [exp]	0	1
AT5G09680		RLF	reduced lateral root formation...		Lus10039342 [exp]	2.0	0.9494
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10017618 [exp]	3.9	0.9355
					Lus10026081 [exp]	7.6	0.9403
AT1G76070			unknown protein		Lus10005623 [exp]	12.0	0.9195
AT4G09670			Oxidoreductase family protein ...		Lus10005674 [exp]	14.5	0.9273
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10039270 [exp]	15.1	0.8545
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014498 [exp]	15.5	0.9334
AT3G09010			Protein kinase superfamily pro...		Lus10040392 [exp]	15.9	0.9079
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10035258 [exp]	19.9	0.9296
AT1G70570			anthranilate phosphoribosyltra...		Lus10006201 [exp]	20.1	0.9082

Compare expression of checked genes

Lus10027975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.