Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48020 573 / 0 Major facilitator superfamily protein (.1.2) AT5G18840 475 / 7e-166 Major facilitator superfamily protein (.1) AT3G05150 460 / 4e-160 Major facilitator superfamily protein (.1) AT1G54730 410 / 9e-141 Major facilitator superfamily protein (.1.2.3) AT1G08930 363 / 1e-121 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT1G08920 360 / 3e-121 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT3G20460 356 / 3e-119 Major facilitator superfamily protein (.1) AT3G05165 346 / 2e-115 Major facilitator superfamily protein (.1.2.3.4.5) AT1G75220 345 / 5e-115 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT1G19450 342 / 7e-114 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008182 [exp] 764 / 0 AT2G48020 613 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 697 / 0 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 642 / 0 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 628 / 0 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 616 / 0 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 601 / 0 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10042676 [exp] 555 / 0 AT2G48020 603 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 461 / 3e-160 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10035354 [exp] 414 / 5e-142 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212900 [exp] 634 / 0 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 565 / 0 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 492 / 1e-172 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 429 / 4e-148 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G040000 [exp] 362 / 7e-122 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.013G027700 [exp] 356 / 2e-119 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G039900 [exp] 356 / 4e-119 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 356 / 4e-119 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.007G024300 [exp] 343 / 6e-114 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.002G259900 [exp] 336 / 3e-111 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10027976 pacid=23181238 polypeptide=Lus10027976 locus=Lus10027976.g ID=Lus10027976.BGIv1.0 annot-version=v1.0 ATGTCAATCAAGGAAGAAGACATGGAGAGCAATGGTACTAAGAGGGAGCCATTGATCCAGAAGAAGGGTTACACAGACGACGAAGAACATGGGTCATCGT CGTCGGAGAAGAAGAATGAGAGCTTGTGGATGGTCTACTTCAGCACTTTCGTTGCTGTCTGTGGCTCCTACGAGTTTGGTTGCTGTGCAGGGTTCTCTTC TCCAATACAAGATGCAATCACACAAGATCTTTCACTGTCTCTAGCCGAGGCAATGAGACTGTCGAGTGCCTTCTGTGTAGCTGGCTGGCTCGCCATTTAC TTTGCTCAGGGTGCAGTGGCATTGGACATTGGCAGATTGGCTACTGGCTATGGGATGGGAGTTTTCTCCTACGTAGTGCCAGTTTTCATATCCGAAATCG CGCCAAAGAACCTTCGAGGAGCTCTCGCTACTTTGAATCAGGTCATGATCTGCGGTGGAGTGTCGGTTTCCTTCATTATAGGCACATTTTTGACCTGGAG GGCTCTTGCTTTAACTGGACTTGTCCCTTGTGCAATCCTGCTTATCGGGCTGATGTTCATGCCCGAATCCCCTAGATGGCTAGCAAAGACAGGCAACGAG AAGGATTTTGAAGTTGCGTTGCAGAAACTCCGAGGCAAGGATGCTGACATTTCGAAAGAGGCTGGTGAAATCAAGGAATACATCGAGACACTCGACCGCC TGCCCAAAGTAAAGCTGCTAGACTTGTTCAATAGAAGATACCTAAGATCAGTCATTATTGGTGTTGGGTTGATGGTGGCCCAACAATTTGGAGGCATCAA TGGAGTCTGCTTCTATGTCAGCAACATTTTCAAGTCAGCAGGATTCTCTCCGAGTGTTGGAACTATCACCTATGCTATTATTCAGGTTGTAGTAACACTC TTAATCACACAAGTGATTGACAGAGCAGGAAGGAAGCCTCTTTTACTGGTTTCTGGAACCGGCTTGGTACTATCTTGCCTGATGGTAGCCCTTTCATTCT ACCTCAAGTTGTACATTGGATCCTTTTCAGCAGGGATGGGTGCAGTTCCATGGGTGGTCATGTCTGAGATATTCCCAATAAACATAAAGGGAGCAGCTGG AGGATTGGCAACACTAGTGAACTGGTTTGGTGCATGGGCAATTTCCTACACTTACAACTTCCTCATGTCTTGGAGCTCCTATGGTACCTTTCTTGTTTAT GCTGCAATCAATGCACTAGGCATAGTATTCGTCATCATGGTGGTACCTGAGACAAAAGGCAGAACCTTAGAACAGATACAAGCAGCCATTAATGGTTAG
AA sequence Show only first row Show all	>Lus10027976 pacid=23181238 polypeptide=Lus10027976 locus=Lus10027976.g ID=Lus10027976.BGIv1.0 annot-version=v1.0 MSIKEEDMESNGTKREPLIQKKGYTDDEEHGSSSSEKKNESLWMVYFSTFVAVCGSYEFGCCAGFSSPIQDAITQDLSLSLAEAMRLSSAFCVAGWLAIY FAQGAVALDIGRLATGYGMGVFSYVVPVFISEIAPKNLRGALATLNQVMICGGVSVSFIIGTFLTWRALALTGLVPCAILLIGLMFMPESPRWLAKTGNE KDFEVALQKLRGKDADISKEAGEIKEYIETLDRLPKVKLLDLFNRRYLRSVIIGVGLMVAQQFGGINGVCFYVSNIFKSAGFSPSVGTITYAIIQVVVTL LITQVIDRAGRKPLLLVSGTGLVLSCLMVALSFYLKLYIGSFSAGMGAVPWVVMSEIFPINIKGAAGGLATLVNWFGAWAISYTYNFLMSWSSYGTFLVY AAINALGIVFVIMVVPETKGRTLEQIQAAING

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48020			Major facilitator superfamily ...		Lus10027976 [exp]	0	1
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026573 [exp]	2.8	0.8617
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	6.2	0.8441
AT3G25570			Adenosylmethionine decarboxyla...		Lus10019146 [exp]	7.9	0.8301
AT2G48020			Major facilitator superfamily ...		Lus10008182 [exp]	8.7	0.7671
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10028580 [exp]	12.0	0.7802
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	14.3	0.7723
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	14.4	0.8151
AT3G56010			unknown protein		Lus10040939 [exp]	15.7	0.7976
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10036245 [exp]	17.0	0.7829
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10018885 [exp]	20.1	0.7944

Compare expression of checked genes

Lus10027976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.