Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14220 330 / 4e-116 Ribonuclease T2 family protein (.1) AT1G26820 321 / 2e-112 RNS3 ribonuclease 3 (.1) AT2G02990 299 / 1e-103 RNS1, ATRNS1 ribonuclease 1 (.1) AT1G14210 224 / 5e-74 Ribonuclease T2 family protein (.1) AT2G39780 119 / 1e-32 RNS2 ribonuclease 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012823 [exp] 290 / 9e-100 AT2G02990 334 / 2e-117 ribonuclease 1 (.1) Lus10030468 [exp] 288 / 4e-99 AT2G02990 341 / 3e-120 ribonuclease 1 (.1) Lus10003110 [exp] 134 / 6e-39 AT1G26820 142 / 4e-42 ribonuclease 3 (.1) Lus10035881 [exp] 124 / 6e-35 AT2G02990 130 / 4e-37 ribonuclease 1 (.1) Lus10035882 [exp] 122 / 5e-34 AT1G14220 128 / 1e-36 Ribonuclease T2 family protein (.1) Lus10041084 [exp] 101 / 2e-25 AT2G39780 306 / 2e-104 ribonuclease 2 (.1.2) Lus10036409 [exp] 86 / 4e-20 AT2G39780 276 / 5e-94 ribonuclease 2 (.1.2) Lus10022385 [exp] 84 / 7e-19 AT1G26820 92 / 2e-21 ribonuclease 3 (.1) Lus10015409 [exp] 72 / 5e-15 AT1G14220 79 / 8e-18 Ribonuclease T2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086800 [exp] 332 / 8e-117 AT1G26820 288 / 1e-99 ribonuclease 3 (.1) Potri.008G086700 [exp] 298 / 3e-103 AT2G02990 310 / 8e-108 ribonuclease 1 (.1) Potri.010G168700 [exp] 296 / 1e-102 AT2G02990 337 / 2e-118 ribonuclease 1 (.1) Potri.010G168600 [exp] 157 / 4e-49 AT1G26820 147 / 1e-45 ribonuclease 3 (.1) Potri.014G174400 [exp] 122 / 5e-34 AT2G39780 371 / 5e-131 ribonuclease 2 (.1.2) Potri.013G134400 [exp] 78 / 9e-17 AT2G02990 82 / 4e-18 ribonuclease 1 (.1) Potri.006G118200 [exp] 66 / 2e-14 AT2G02990 86 / 3e-22 ribonuclease 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00445 [flax] [poplar] Ribonuclease_T2 Ribonuclease T2 family
Representative CDS sequence Show only first row Show all	>Lus10027978 pacid=23181227 polypeptide=Lus10027978 locus=Lus10027978.g ID=Lus10027978.BGIv1.0 annot-version=v1.0 ATGAAGTCAGCTAGCTTCTTCTCTGTTTCTGTCACCCTTCTGATGCTGCAATGGCTTTCGGTCCTCTGTGCTGCGCAGGATTTCGATTTCTTCTACCTCG TCCAGCAGTGGCCAGGAGCATATTGTGACTCCAGGCAGAAATGCTGCTACCCAAAAACGGGCAAACCGACAGCCGATTTCAGCATCCACGGACTCTGGCC TAACTACAAGAACGGTGCTTACCCATCAAACTGCGATCGCGATAGCGAATTCGACGAATCCCAGATTGAAGATTTACTGCCACAACTGCAAACCTCCTGG CCGACGCTAGCGTGTCCGAGTGGGGACGGATACAAGTTCTGGACTCACGAGTGGGAGAAGCACGGGACCTGCTCCGAATCCGAGATGGGGCAGCACGAGT ACTTCGAAGCTGCTCTTAAACTGAAGCAGAAGTCCAACCTTCTCCAGGTTCTCAAGTCCGCTGGAATCAGGCCGGACGATGGATTCTACGAGTTGGATAA AGTTGTGGAAGCGATTAAGGAAGGGACGGGGTTCAAGGCATATATCGAGTGTAATGTGGATCCGGCGAGGAATAGTCAACTGTATCAGGTTTACATGTGC GTTGATACTTCGGGGTCTGAGTTTATTGAGTGTCCGATCATGCCGAGAGGGAGATGTGGTTCCTCGATCCAGTTTCCCAAGTTCTAG
AA sequence Show only first row Show all	>Lus10027978 pacid=23181227 polypeptide=Lus10027978 locus=Lus10027978.g ID=Lus10027978.BGIv1.0 annot-version=v1.0 MKSASFFSVSVTLLMLQWLSVLCAAQDFDFFYLVQQWPGAYCDSRQKCCYPKTGKPTADFSIHGLWPNYKNGAYPSNCDRDSEFDESQIEDLLPQLQTSW PTLACPSGDGYKFWTHEWEKHGTCSESEMGQHEYFEAALKLKQKSNLLQVLKSAGIRPDDGFYELDKVVEAIKEGTGFKAYIECNVDPARNSQLYQVYMC VDTSGSEFIECPIMPRGRCGSSIQFPKF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14220			Ribonuclease T2 family protein...		Lus10027978 [exp]	0	1
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10030957 [exp]	2.8	0.9073
AT3G47510			unknown protein		Lus10019094 [exp]	5.1	0.8611
AT5G11540			D-arabinono-1,4-lactone oxidas...		Lus10038620 [exp]	5.9	0.8344
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10012106 [exp]	7.7	0.9151
AT2G14095			unknown protein		Lus10010746 [exp]	9.3	0.9012
AT1G03230			Eukaryotic aspartyl protease f...		Lus10000080 [exp]	11.3	0.8371
AT1G21380			Target of Myb protein 1 (.1)		Lus10018948 [exp]	14.5	0.8150
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041225 [exp]	15.0	0.8134
AT3G52500			Eukaryotic aspartyl protease f...		Lus10004204 [exp]	16.4	0.8240
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10040373 [exp]	19.9	0.8716

Compare expression of checked genes

Lus10027978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.